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Protein

Ethylene-responsive transcription factor ERF094

Gene

ERF094

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Acts as an essential integrator of the JA and ethylene signal transduction pathways. Activates the expression of the PDF1.2A gene.1 Publication

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi81 – 13959AP2/ERFPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

  • DNA binding Source: UniProtKB-KW
  • transcription factor activity, sequence-specific DNA binding Source: TAIR

GO - Biological processi

  • ethylene-activated signaling pathway Source: TAIR
  • jasmonic acid and ethylene-dependent systemic resistance Source: TAIR
  • response to ethylene Source: TAIR
  • response to jasmonic acid Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Activator

Keywords - Biological processi

Ethylene signaling pathway, Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Ethylene-responsive transcription factor ERF094
Alternative name(s):
Protein OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59
Gene namesi
Name:ERF094
Synonyms:ORA59
Ordered Locus Names:At1g06160
ORF Names:F9P14.2
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G06160.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 244244Ethylene-responsive transcription factor ERF094PRO_0000290413Add
BLAST

Proteomic databases

PaxDbiQ9LND1.
PRIDEiQ9LND1.

Expressioni

Gene expression databases

GenevisibleiQ9LND1. AT.

Interactioni

Protein-protein interaction databases

BioGridi22367. 2 interactions.
STRINGi3702.AT1G06160.1.

Structurei

3D structure databases

ProteinModelPortaliQ9LND1.
SMRiQ9LND1. Positions 80-142.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 1 AP2/ERF DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG410JEA4. Eukaryota.
ENOG41114BY. LUCA.
HOGENOMiHOG000237624.
InParanoidiQ9LND1.
OMAiFAFESSI.
PhylomeDBiQ9LND1.

Family and domain databases

Gene3Di3.30.730.10. 1 hit.
InterProiIPR001471. AP2/ERF_dom.
IPR016177. DNA-bd_dom.
[Graphical view]
PfamiPF00847. AP2. 1 hit.
[Graphical view]
PRINTSiPR00367. ETHRSPELEMNT.
SMARTiSM00380. AP2. 1 hit.
[Graphical view]
SUPFAMiSSF54171. SSF54171. 1 hit.
PROSITEiPS51032. AP2_ERF. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9LND1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEYQTNFLSG EFSPENSSSS SWSSQESFLW EESFLHQSFD QSFLLSSPTD
60 70 80 90 100
NYCDDFFAFE SSIIKEEGKE ATVAAEEEEK SYRGVRKRPW GKFAAEIRDS
110 120 130 140 150
TRKGIRVWLG TFDTAEAAAL AYDQAAFALK GSLAVLNFPA DVVEESLRKM
160 170 180 190 200
ENVNLNDGES PVIALKRKHS MRNRPRGKKK SSSSSTLTSS PSSSSSYSSS
210 220 230 240
SSSSSLSSRS RKQSVVMTQE SNTTLVVLED LGAEYLEELM RSCS
Length:244
Mass (Da):27,090
Last modified:October 1, 2000 - v1
Checksum:i1077E478A2104AEB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC025290 Genomic DNA. Translation: AAF80213.1.
CP002684 Genomic DNA. Translation: AEE27952.1.
AK228085 mRNA. Translation: BAF00044.1.
BT011001 mRNA. Translation: AAR25637.1.
BT014958 mRNA. Translation: AAT47809.1.
PIRiB86197.
RefSeqiNP_172106.1. NM_100497.2.
UniGeneiAt.42354.

Genome annotation databases

EnsemblPlantsiAT1G06160.1; AT1G06160.1; AT1G06160.
GeneIDi837125.
GrameneiAT1G06160.1; AT1G06160.1; AT1G06160.
KEGGiath:AT1G06160.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC025290 Genomic DNA. Translation: AAF80213.1.
CP002684 Genomic DNA. Translation: AEE27952.1.
AK228085 mRNA. Translation: BAF00044.1.
BT011001 mRNA. Translation: AAR25637.1.
BT014958 mRNA. Translation: AAT47809.1.
PIRiB86197.
RefSeqiNP_172106.1. NM_100497.2.
UniGeneiAt.42354.

3D structure databases

ProteinModelPortaliQ9LND1.
SMRiQ9LND1. Positions 80-142.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi22367. 2 interactions.
STRINGi3702.AT1G06160.1.

Proteomic databases

PaxDbiQ9LND1.
PRIDEiQ9LND1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G06160.1; AT1G06160.1; AT1G06160.
GeneIDi837125.
GrameneiAT1G06160.1; AT1G06160.1; AT1G06160.
KEGGiath:AT1G06160.

Organism-specific databases

TAIRiAT1G06160.

Phylogenomic databases

eggNOGiENOG410JEA4. Eukaryota.
ENOG41114BY. LUCA.
HOGENOMiHOG000237624.
InParanoidiQ9LND1.
OMAiFAFESSI.
PhylomeDBiQ9LND1.

Miscellaneous databases

PROiQ9LND1.

Gene expression databases

GenevisibleiQ9LND1. AT.

Family and domain databases

Gene3Di3.30.730.10. 1 hit.
InterProiIPR001471. AP2/ERF_dom.
IPR016177. DNA-bd_dom.
[Graphical view]
PfamiPF00847. AP2. 1 hit.
[Graphical view]
PRINTSiPR00367. ETHRSPELEMNT.
SMARTiSM00380. AP2. 1 hit.
[Graphical view]
SUPFAMiSSF54171. SSF54171. 1 hit.
PROSITEiPS51032. AP2_ERF. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
    Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K.
    , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
    Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."
    Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.
    , Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.
    Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  4. Cheuk R.F., Chen H., Kim C.J., Shinn P., Ecker J.R.
    Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  5. "Genome-wide analysis of the ERF gene family in Arabidopsis and rice."
    Nakano T., Suzuki K., Fujimura T., Shinshi H.
    Plant Physiol. 140:411-432(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY, NOMENCLATURE.
  6. "The AP2/ERF domain transcription factor ORA59 integrates jasmonic acid and ethylene signals in plant defense."
    Pre M., Atallah M., Champion A., De Vos M., Pieterse C.M.J., Memelink J.
    Plant Physiol. 147:1347-1357(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION.

Entry informationi

Entry nameiERF94_ARATH
AccessioniPrimary (citable) accession number: Q9LND1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 12, 2007
Last sequence update: October 1, 2000
Last modified: February 17, 2016
This is version 99 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.