Reviewed, UniProtKB/Swiss-Prot Q9LMM6 (BPS1_ARATH)

Names and origin

Protein names

Recommended name:
    Protein BPS1, chloroplastic
Alternative name(s):
    Protein BYPASS 1

Gene names

Name:	BPS1
Ordered Locus Names:	At1g01550
ORF Names:	F22L4.9

Organism

Arabidopsis thaliana (Mouse-ear cress) [Complete proteome]

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › eurosids II › Brassicales › Brassicaceae › Arabidopsis

Protein attributes

Sequence length	349 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Evidence at transcript level.

General annotation (Comments)

Function	Required for normal root and shoot development. Prevents constitutive production of a root mobile carotenoid-derived signaling compound that is capable of arresting shoot and leaf development. Ref.4 Ref.5
Subcellular location	Plastid › chloroplast Potential.
Tissue specificity	Expressed in roots, hypocotyls, cotyledons, leaves, flowers and siliques. Ref.4
Miscellaneous	The mobile signal produced in absence of BPS1 is neither abscisic acid nor the MAX-dependent hormone.

Ontologies

Keywords
Cellular component	Chloroplast Plastid
Domain	Transit peptide
Technical term	Complete proteome
Gene Ontology (GO)
Cellular component	chloroplast Inferred from electronic annotation. Source: UniProtKB-SubCell plasma membrane Inferred from direct assay. Source: TAIR
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Transit peptide	1 – 43	43	Chloroplast Potential
	Chain	44 – 349	306	Protein BPS1, chloroplastic		PRO_0000352246

Sequences

	Sequence		Length	Mass (Da)
	Q9LMM6-1 [UniParc]. Last modified October 1, 2000. Version 1. Checksum: 7C0FF28E4BD05284	FASTA	349	38,584
	10 20 30 40 50 60 MARPQDPPRG FFPFGNPFKN LSSKNSVLSS KLLPLLNNFE TNLASSISKL VPKEKSDILT 70 80 90 100 110 120 VSWMKQAMES LCETHNGIKT LITDLELPVS DWEDKWVDVY LDISVKLLDL CNAFSSELTR 130 140 150 160 170 180 LNQGHLLLQF ALHNLEANSP QNLSKAQSSL DSWKQHIVSK NPRIENCRAI LSSLVQTLNL 190 200 210 220 230 240 PKVKNSAKGK VLMRALYGVK VKTLYISGVF AAAFSGSSQN LMYLTVSNEL PWAQSFMEVQ 250 260 270 280 290 300 NTMNAEIKNI FLSDGLTVLK ELEAVASGVK KLYPAIQQGS IDPISLQPLK DSVTELSNGI 310 320 330 340 DLVSKEVDCF FKILLSGRDT LLENLRSMGA STLQATSPKK AAGKNYRGF

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Signal peptide selection derived cDNAs from Arabidopsis thaliana leaves and guard cells." Stracke R., Palme K. Submitted (AUG-1998) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA].
[2]	"Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana." Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K. , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W. Nature 408:816-820(2000) [PubMed: 11130712] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
[3]	"Empirical analysis of transcriptional activity in the Arabidopsis genome." Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R. Science 302:842-846(2003) [PubMed: 14593172] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: cv. Columbia.
[4]	"BYPASS1 negatively regulates a root-derived signal that controls plant architecture." Van Norman J.M., Frederick R.L., Sieburth L.E. Curr. Biol. 14:1739-1746(2004) [PubMed: 15458645] [Abstract] Cited for: IDENTIFICATION, FUNCTION, TISSUE SPECIFICITY.
[5]	"Dissecting the biosynthetic pathway for the bypass1 root-derived signal." Van Norman J.M., Sieburth L.E. Plant J. 49:619-628(2007) [PubMed: 17217459] [Abstract] Cited for: FUNCTION.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBLGenBankDDBJ	AF083676 mRNA. Translation: AAN60235.1. AC061957 Genomic DNA. Translation: AAF81313.1. AF349532 mRNA. Translation: AAK15579.1. AY059805 mRNA. Translation: AAL24287.1. AY063906 mRNA. Translation: AAL36262.1. AY091197 mRNA. Translation: AAM14136.1. BT000041 mRNA. Translation: AAN15360.1.
IPI	IPI00534067.
PIR	B86146.
RefSeq	NP_001030929.1. NP_563630.1.
UniGene	At.19713
3D structure databases
ModBase	Search...
Proteomic databases
PRIDE	Q9LMM6.
Genome annotation databases
GeneID	839536.
GenomeReviews	Gene locus AT1G01550 in contig CT485782_GR.
KEGG	ath:AT1G01550.
NMPDR	fig|3702.1.peg.265.
Organism-specific databases
TAIR	At1g01550.
Phylogenomic databases
OMA	DISVKLL
Gene expression databases
ArrayExpress	Q9LMM6.
Genevestigator	Q9LMM6.
Family and domain databases
ProtoNet	Search...

Entry information

Entry name

BPS1_ARATH

Accession

Primary (citable) accession number: Q9LMM6

Entry history

Integrated into UniProtKB/Swiss-Prot:	October 14, 2008
Last sequence update:	October 1, 2000
Last modified:	November 3, 2009
This is version 40 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

PPAP (Plant Proteome Annotation Project)