Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Ran-binding protein 1 homolog a

Gene

RANBP1A

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processmRNA transport, Protein transport, Translocation, Transport

Names & Taxonomyi

Protein namesi
Recommended name:
Ran-binding protein 1 homolog a
Alternative name(s):
Ran-binding protein siRanBP
Gene namesi
Name:RANBP1A
Synonyms:SIRANBP
Ordered Locus Names:At1g07140
ORF Names:F10K1.15
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G07140.
TAIRilocus:2007467. AT1G07140.

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Nuclear pore complex, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000971871 – 228Ran-binding protein 1 homolog aAdd BLAST228

Proteomic databases

PaxDbiQ9LMK7.
PRIDEiQ9LMK7.

PTM databases

iPTMnetiQ9LMK7.

Expressioni

Tissue specificityi

Ubiquitous. Preferentially expressed in root tips and gynoecium.1 Publication

Gene expression databases

ExpressionAtlasiQ9LMK7. baseline and differential.
GenevisibleiQ9LMK7. AT.

Interactioni

Subunit structurei

Interacts with the GTP-bound form of RAN1, RAN2 and RAN3.1 Publication

GO - Molecular functioni

Protein-protein interaction databases

BioGridi22466. 3 interactors.
IntActiQ9LMK7. 3 interactors.
STRINGi3702.AT1G07140.1.

Structurei

3D structure databases

ProteinModelPortaliQ9LMK7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini27 – 162RanBD1PROSITE-ProRule annotationAdd BLAST136

Phylogenomic databases

eggNOGiKOG0864. Eukaryota.
COG5171. LUCA.
HOGENOMiHOG000176323.
InParanoidiQ9LMK7.
KOiK15306.
OMAiHEHREDQ.
OrthoDBiEOG09360PSA.
PhylomeDBiQ9LMK7.

Family and domain databases

Gene3Di2.30.29.30. 1 hit.
InterProiView protein in InterPro
IPR011993. PH_dom-like.
IPR000156. Ran_bind_dom.
PfamiView protein in Pfam
PF00638. Ran_BP1. 1 hit.
SMARTiView protein in SMART
SM00160. RanBD. 1 hit.
SUPFAMiSSF50729. SSF50729. 1 hit.
PROSITEiView protein in PROSITE
PS50196. RANBD1. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9LMK7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATNEPEHEH RDEEEAGANE DEDTGAQVAP IVRLEEVAVT TGEEDEDAVL
60 70 80 90 100
DLKSKLYRFD KDANQWKERG AGTVKFLKHK NTGKIRLVMR QSKTLKICAN
110 120 130 140 150
HFVKSGMSVQ EHVGNEKSCV WHARDFADGE LKDELFCIRF ASIENCKTFM
160 170 180 190 200
QKFKEVAESE EEKEESKDAA DTAGLLEKLT VEETKTEEKT EAKAVETAKT
210 220
EVKAEEKKES EAEKSGEAKK TEESGPST
Length:228
Mass (Da):25,601
Last modified:October 1, 2000 - v1
Checksum:i101E45421EF5B62F
GO

Sequence cautioni

The sequence AAD39835 differs from that shown. Reason: Frameshift at position 225.Curated
The sequence CAA66045 differs from that shown. Reason: Frameshift at position 225.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti75K → N in AAD39835 (Ref. 2) Curated1
Sequence conflicti86R → P in AAD39835 (Ref. 2) Curated1
Sequence conflicti103V → L in AAD39835 (Ref. 2) Curated1
Sequence conflicti132K → Q in AAD39835 (Ref. 2) Curated1
Sequence conflicti137C → Y in AAD39835 (Ref. 2) Curated1
Sequence conflicti194A → L in CAA66045 (PubMed:9025305).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X97377 mRNA. Translation: CAA66045.1. Frameshift.
AF057024 mRNA. Translation: AAD39835.1. Frameshift.
AC067971 Genomic DNA. Translation: AAF82206.1.
CP002684 Genomic DNA. Translation: AEE28081.1.
AF370491 mRNA. Translation: AAK43868.1.
AF410294 mRNA. Translation: AAK95280.1.
AY097364 mRNA. Translation: AAM19880.1.
BT002193 mRNA. Translation: AAN72204.1.
PIRiD86206.
RefSeqiNP_172194.1. NM_100588.4.
UniGeneiAt.22610.
At.23647.
At.74721.

Genome annotation databases

EnsemblPlantsiAT1G07140.1; AT1G07140.1; AT1G07140.
GeneIDi837225.
GrameneiAT1G07140.1; AT1G07140.1; AT1G07140.
KEGGiath:AT1G07140.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRBP1A_ARATH
AccessioniPrimary (citable) accession number: Q9LMK7
Secondary accession number(s): O04149, Q9XHS1
Entry historyiIntegrated into UniProtKB/Swiss-Prot: September 27, 2005
Last sequence update: October 1, 2000
Last modified: July 5, 2017
This is version 110 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names