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Q9LM78 (Q9LM78_ARATH) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 92. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

F2D10.25 EMBL AAF80620.1

Putative uncharacterized protein At1g20760 EMBL BAE99021.1
Gene names
Ordered Locus Names:AT1G20760 EMBL AEE30019.1, At1g20760 TAIR AT1G20760 EMBL BAE99021.1
OrganismArabidopsis thaliana (Mouse-ear cress) [Reference proteome]
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis

Protein attributes

Sequence length1019 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Cellular_componentplasma membrane

Inferred from direct assay PubMed 17317660. Source: TAIR

   Molecular_functioncalcium ion binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q9LM78 [UniParc].

Last modified October 1, 2000. Version 1.
Checksum: 493D5E1AC362EFCF

FASTA1,019109,818
        10         20         30         40         50         60 
MAGQNPNMDQ FEAYFKRADL DGDGRISGAE AVGFFQGSGL SKQVLAQIWS LSDRSHSGFL 

        70         80         90        100        110        120 
DRQNFYNSLR LVTVAQSKRD LTPEIVNAAL NTPAAAKIPP PKINLSAIPA PRPNPAATTV 

       130        140        150        160        170        180 
GPVSGFGGPG APNAIVNQNY FPPQQNQQMR PNQGISGLTS LRPAAGPEYR PSALSGQFQP 

       190        200        210        220        230        240 
VPVGSVTHPP QPVPTSVSGP GSSTFNLNSL YAGAGNTSGY SSGFGGGSLA APSPGLKQES 

       250        260        270        280        290        300 
HIDPKALVVS GNGGDMFSSF QQKQEPTLSN SSISSAIVPT SAGIQPPTKP NALDSLQSTF 

       310        320        330        340        350        360 
SMLPSGNQLQ QPRPAASSQP AVSSQGPSSG LPPGSAVGSG HSTPAGNNQP PWPKMKPSDV 

       370        380        390        400        410        420 
QKYTKVFMEV DSDKDGKITG EQARNLFLSW RLPREVLKHV WELSDQDNDT MLSLREFCIS 

       430        440        450        460        470        480 
LYLMERYREG RPLPTALPSS IMFDETLLSI SGAPSHGYAN AGWGSGQGFV QQPGMGARPI 

       490        500        510        520        530        540 
TPTTGMRPPV PAPGPQPGSG IPPNQPRNQA PVLDAPFANH LGNGYSASSN LPEAAADEEK 

       550        560        570        580        590        600 
VDEKQNAYMD SREKLDYYRT KMQDIVLYKS RCDNRLNEIS ERASADKREA ETLAKKYEEK 

       610        620        630        640        650        660 
YKQVAEIGSK LTIEEARFRE IEGRKMELSQ AIVNMEQGGS ADGLLQVRAD RIQSDLEELM 

       670        680        690        700        710        720 
KALTERCKKH GLEVNSKALV DLPAGWQPGI QEGAALWDEE WDKFEDEGFG NEITFDKSKE 

       730        740        750        760        770        780 
QNSSGEKENG TVDDGSGPPD SPTHVEDNYG PFSETSDRHH ESEYGTTHSE DRSPRDSPVS 

       790        800        810        820        830        840 
RNATEVPSPD YSQGKNSEFF DDSNWASAFD TNDDVDSVWG FDASKSQDGD YFGSGDDFGG 

       850        860        870        880        890        900 
NTARADSPSS RSFGAQRKSQ FAFDDSVPST PLSRFGNSPP RFSDASARDN NFDSFSRFDS 

       910        920        930        940        950        960 
FNTSEAGAGF SSQPERLSRF DSINSSKDFG GAAFSRFDSI NSSRDVTGAE KFSRFDSINS 

       970        980        990       1000       1010 
SKDFGGPSLS RFDSMNSTKD FSGSHGYSFD DADPFGSTGP FKVSSDESPT KRSDNWNSF 

« Hide

References

« Hide 'large scale' references
[1]"Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K. expand/collapse author list , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[2]"Genomic sequence for Arabidopsis thaliana BAC F2D10 from chromosome I."
Shinn P., Brooks S., Buehler E., Chao Q., Johnson-Hopson C., Khan S., Kim C., Altafi H., Bei Q., Chin C., Chiou J., Choi E., Conn L., Conway A., Gonzales A., Hansen N., Howing B., Koo T. expand/collapse author list , Lam B., Lee J., Lenz C., Li J., Liu A., Liu K., Liu S., Mukharsky N., Nguyen M., Palm C., Pham P., Sakano H., Schwartz J., Southwick A., Thaveri A., Toriumi M., Vaysberg M., Yu G., Federspiel N.A., Theologis A., Ecker J.R.
Submitted (JUN-2000) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[3]Shinn P., Brooks S., Buehler E., Chao Q., Cheuk R., Johnson-Hopson C., Khan S., Kim C., Altafi H., Bei B., Chin C., Chiou J., Choi E., Conn L., Conway A., Gonzalez A., Hansen N., Howing B. expand/collapse author list , Koo T., Lam B., Lee J., Lenz C., Li J., Liu A., Liu J., Liu S., Mukharsky N., Nguyen M., Palm C., Pham P., Sakano H., Schwartz J., Southwick A., Thaveri A., Toriumi M., Vaysberg M., Yu G., Davis R., Federspiel N., Theologis A., Ecker J.
Submitted (JUL-2000) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[4]"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."
Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Morosawa T., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K. expand/collapse author list , Akiyama K., Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.
Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[5]TAIR
Swarbreck D., Lamesch P., Wilks C., Huala E.
Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[6]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Columbia.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AC069251 Genomic DNA. Translation: AAF80620.1.
CP002684 Genomic DNA. Translation: AEE30019.1.
AK226951 mRNA. Translation: BAE99021.1.
RefSeqNP_173499.1. NM_101928.6.
UniGeneAt.27660.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT1G20760.1; AT1G20760.1; AT1G20760.
GeneID838666.
KEGGath:AT1G20760.

Organism-specific databases

TAIRAT1G20760.
At1g20760.

Phylogenomic databases

HOGENOMHOG000242089.
InParanoidQ9LM78.
OMARFDSINS.
ProtClustDBCLSN2914684.

Gene expression databases

GenevestigatorQ9LM78.

Family and domain databases

Gene3D1.10.238.10. 2 hits.
InterProIPR011992. EF-hand-dom_pair.
IPR002048. EF_hand_dom.
IPR000261. EPS15_homology.
[Graphical view]
PfamPF13202. EF-hand_5. 1 hit.
[Graphical view]
SMARTSM00054. EFh. 4 hits.
SM00027. EH. 2 hits.
[Graphical view]
PROSITEPS50222. EF_HAND_2. 4 hits.
PS50031. EH. 2 hits.
[Graphical view]
ProtoNetSearch...

Other

PROQ9LM78.

Entry information

Entry nameQ9LM78_ARATH
AccessionPrimary (citable) accession number: Q9LM78
Entry history
Integrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: October 1, 2000
Last modified: April 16, 2014
This is version 92 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)