Q9LKA9 (B3GTD_ARATH) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Probable beta-1,3-galactosyltransferase 13
EC=2.4.1.-

Gene names

Name:	B3GALT13
Ordered Locus Names:	At3g14960
ORF Names:	K15M2.10

Organism

Arabidopsis thaliana (Mouse-ear cress)

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length	343 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Function	Beta-1,3-galactosyltransferase that transfers galactose from UDP-galactose to substrates with a terminal glycosyl residue By similarity.
Cofactor	Manganese By similarity.
Pathway	Protein modification; protein glycosylation.
Subcellular location	Golgi apparatus membrane; Single-pass type II membrane protein Probable.
Sequence similarities	Belongs to the glycosyltransferase 31 family.

Ontologies

Keywords
Cellular component	Golgi apparatus Membrane
Domain	Signal-anchor Transmembrane Transmembrane helix
Ligand	Manganese
Molecular function	Glycosyltransferase Transferase
PTM	Glycoprotein
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	protein glycosylation Inferred from electronic annotation. Source: InterPro
Cellular component	Golgi membrane Inferred from electronic annotation. Source: UniProtKB-SubCell integral to membrane Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	galactosyltransferase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 343	343	Probable beta-1,3-galactosyltransferase 13		PRO_0000359423
Regions
	Transmembrane	22 – 42	21	Helical; Signal-anchor for type II membrane protein; Potential
Amino acid modifications
	Glycosylation	265	1	N-linked (GlcNAc...) Potential

Sequences

	Sequence		Length	Mass (Da)
	Q9LKA9 [UniParc]. Last modified October 1, 2000. Version 1. Checksum: 6CE8668CB341B49A	FASTA	343	38,722
	10 20 30 40 50 60 MSSSPKLFHA RPSFFTRRST PLIVFTSLAI GLTGFLFGLS TILFPGLRLS GRSCLTNLPP 70 80 90 100 110 120 KTVKIVWDVA GNSIVNGEVK RHKVMGFVGI QTGFRSAGRR RALRNTWMPS DPEGLRRLEE 130 140 150 160 170 180 STGLAIRFII GKTKDEAKMV ELRSEVAMYD DFILLDIEEE YSKLPYKTLA FFKAAYALYD 190 200 210 220 230 240 SEFYVKADDD IYLRPDRLSL LLAKERGHSQ TYLGCMKKGP VFTDPKLKWY EPLADLLGKE 250 260 270 280 290 300 YFLHAYGPIY ALSADVVTSL VALKNNSFRM FSNEDVTIGA WMLAMNVNHE NLHTLCEPEC 310 320 330 340 SPYSIAVWDI PKCSGLCNPE KRMLELHMLE SCSKSPTLPS DDE

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC clones." Kaneko T., Katoh T., Sato S., Nakamura Y., Asamizu E., Tabata S. DNA Res. 7:217-221(2000) [PubMed: 10907853] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
[2]	The Arabidopsis Information Resource (TAIR) Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases Cited for: GENOME REANNOTATION. Strain: cv. Columbia.
[3]	"Empirical analysis of transcriptional activity in the Arabidopsis genome." Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R. Science 302:842-846(2003) [PubMed: 14593172] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: cv. Columbia.
[4]	"Identification of a novel group of putative Arabidopsis thaliana beta-(1,3)-galactosyltransferases." Qu Y., Egelund J., Gilson P.R., Houghton F., Gleeson P.A., Schultz C.J., Bacic A. Plant Mol. Biol. 68:43-59(2008) [PubMed: 18548197] [Abstract] Cited for: GENE FAMILY, NOMENCLATURE.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AP000370 Genomic DNA. Translation: BAA97059.1. CP002686 Genomic DNA. Translation: AEE75594.1. AY070398 mRNA. Translation: AAL49894.1. AY133728 mRNA. Translation: AAM91662.1.
IPI	IPI00535774.
RefSeq	NP_188114.1. NM_112358.3.
UniGene	At.6657.
3D structure databases
ProteinModelPortal	Q9LKA9.
ModBase	Search...
Protein family/group databases
CAZy	GT31. Glycosyltransferase Family 31.
Proteomic databases
PRIDE	Q9LKA9.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	AT3G14960.1; AT3G14960.1; AT3G14960.
GeneID	820725.
GenomeReviews	Gene locus AT3G14960 in contig BA000014_GR.
KEGG	ath:AT3G14960.
NMPDR	fig|3702.1.peg.13642.
Organism-specific databases
TAIR	At3g14960.
Phylogenomic databases
eggNOG	KOG2288.
GeneTree	EPGT00070000029284.
HOGENOM	HBG714704.
InParanoid	Q9LKA9.
OMA	LRNTWMP.
PhylomeDB	Q9LKA9.
ProtClustDB	CLSN2685084.
Gene expression databases
ArrayExpress	Q9LKA9.
Genevestigator	Q9LKA9.
Family and domain databases
InterPro	IPR002659. Glyco_trans_31. [Graphical view]
PANTHER	PTHR11214. Glyco_trans_31. 1 hit.
Pfam	PF01762. Galactosyl_T. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B3GTD_ARATH

Accession

Primary (citable) accession number: Q9LKA9

Entry history

Integrated into UniProtKB/Swiss-Prot:	January 20, 2009
Last sequence update:	October 1, 2000
Last modified:	December 14, 2011
This is version 55 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Plant Protein Annotation Program