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Protein

Syntaxin-32

Gene

SYP32

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Vesicle trafficking protein that functions in the secretory pathway.By similarity

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processProtein transport, Transport

Enzyme and pathway databases

ReactomeiR-ATH-204005 COPII (Coat Protein 2) Mediated Vesicle Transport
R-ATH-5694530 Cargo concentration in the ER
R-ATH-6807878 COPI-mediated anterograde transport
R-ATH-6811438 Intra-Golgi traffic

Names & Taxonomyi

Protein namesi
Recommended name:
Syntaxin-32
Short name:
AtSYP32
Gene namesi
Name:SYP32
Ordered Locus Names:At3g24350
ORF Names:K7M2.13
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G24350

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 325CytoplasmicSequence analysisAdd BLAST325
Transmembranei326 – 346Helical; Anchor for type IV membrane proteinSequence analysisAdd BLAST21
Topological domaini347VesicularSequence analysis1

Keywords - Cellular componenti

Golgi apparatus, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002102571 – 347Syntaxin-32Add BLAST347

Proteomic databases

PaxDbiQ9LK09

PTM databases

iPTMnetiQ9LK09

Expressioni

Gene expression databases

ExpressionAtlasiQ9LK09 baseline and differential
GenevisibleiQ9LK09 AT

Interactioni

Subunit structurei

Part of the t-SNARE complex.By similarity

GO - Molecular functioni

Protein-protein interaction databases

BioGridi735676 interactors.
IntActiQ9LK09 76 interactors.
STRINGi3702.AT3G24350.2

Structurei

3D structure databases

ProteinModelPortaliQ9LK09
SMRiQ9LK09
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini255 – 317t-SNARE coiled-coil homologyPROSITE-ProRule annotationAdd BLAST63

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi237 – 259Gln-richAdd BLAST23

Sequence similaritiesi

Belongs to the syntaxin family.Curated

Keywords - Domaini

Coiled coil, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG0812 Eukaryota
ENOG410Y2MB LUCA
HOGENOMiHOG000194860
InParanoidiQ9LK09
KOiK08490
PhylomeDBiQ9LK09

Family and domain databases

InterProiView protein in InterPro
IPR010989 SNARE
IPR006012 Syntaxin/epimorphin_CS
IPR000727 T_SNARE_dom
PfamiView protein in Pfam
PF05739 SNARE, 1 hit
SMARTiView protein in SMART
SM00397 t_SNARE, 1 hit
SUPFAMiSSF47661 SSF47661, 2 hits
PROSITEiView protein in PROSITE
PS00914 SYNTAXIN, 1 hit
PS50192 T_SNARE, 1 hit

Sequencei

Sequence statusi: Complete.

This entry describes 1 isoform i produced by alternative splicing. AlignAdd to basket

Note: A number of isoforms are produced. According to EST sequences.
Isoform 1 (identifier: Q9LK09-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MSARHGQSSY RDRSDEFFKI VETLRRSIAP APAANNVPYG NNRNDGARRE
60 70 80 90 100
DLINKSEFNK RASHIGLAIN QTSQKLSKLA KLAKRTSVFD DPTQEIQELT
110 120 130 140 150
VVIKQEISAL NSALVDLQLF RSSQNDEGNN SRDRDKSTHS ATVVDDLKYR
160 170 180 190 200
LMDTTKEFKD VLTMRTENMK VHESRRQLFS SNASKESTNP FVRQRPLAAK
210 220 230 240 250
AAASESVPLP WANGSSSSSS QLVPWKPGEG ESSPLLQQSQ QQQQQQQQQM
260 270 280 290 300
VPLQDTYMQG RAEALHTVES TIHELSSIFT QLATMVSQQG EIAIRIDQNM
310 320 330 340
EDTLANVEGA QSQLARYLNS ISSNRWLMMK IFFVLIAFLM IFLFFVA
Length:347
Mass (Da):39,119
Last modified:October 1, 2000 - v1
Checksum:i1DF52CC9ED9CD6C0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP000382 Genomic DNA Translation: BAB02935.1
CP002686 Genomic DNA Translation: AEE76892.1
BT004300 mRNA Translation: AAO42298.1
BT008604 mRNA Translation: AAP40429.1
RefSeqiNP_189078.2, NM_113342.4 [Q9LK09-1]
UniGeneiAt.37543

Genome annotation databases

EnsemblPlantsiAT3G24350.1; AT3G24350.1; AT3G24350 [Q9LK09-1]
GeneIDi822024
GrameneiAT3G24350.1; AT3G24350.1; AT3G24350 [Q9LK09-1]
KEGGiath:AT3G24350

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Entry informationi

Entry nameiSYP32_ARATH
AccessioniPrimary (citable) accession number: Q9LK09
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 12, 2003
Last sequence update: October 1, 2000
Last modified: April 25, 2018
This is version 115 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome