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Protein

Syntaxin-32

Gene

SYP32

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Vesicle trafficking protein that functions in the secretory pathway.By similarity

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Protein transport, Transport

Enzyme and pathway databases

ReactomeiR-ATH-204005. COPII (Coat Protein 2) Mediated Vesicle Transport.
R-ATH-5694530. Cargo concentration in the ER.
R-ATH-6807878. COPI-mediated anterograde transport.

Names & Taxonomyi

Protein namesi
Recommended name:
Syntaxin-32
Short name:
AtSYP32
Gene namesi
Name:SYP32
Ordered Locus Names:At3g24350
ORF Names:K7M2.13
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

TAIRiAT3G24350.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 325325CytoplasmicSequence analysisAdd
BLAST
Transmembranei326 – 34621Helical; Anchor for type IV membrane proteinSequence analysisAdd
BLAST
Topological domaini347 – 3471VesicularSequence analysis

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Golgi apparatus, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 347347Syntaxin-32PRO_0000210257Add
BLAST

Proteomic databases

PaxDbiQ9LK09.
PRIDEiQ9LK09.

Expressioni

Gene expression databases

ExpressionAtlasiQ9LK09. baseline and differential.
GenevisibleiQ9LK09. AT.

Interactioni

Subunit structurei

Part of the t-SNARE complex.By similarity

Protein-protein interaction databases

BioGridi7356. 76 interactions.
IntActiQ9LK09. 76 interactions.
STRINGi3702.AT3G24350.2.

Structurei

3D structure databases

ProteinModelPortaliQ9LK09.
SMRiQ9LK09. Positions 263-301.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini255 – 31763t-SNARE coiled-coil homologyPROSITE-ProRule annotationAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi237 – 25923Gln-richAdd
BLAST

Sequence similaritiesi

Belongs to the syntaxin family.Curated
Contains 1 t-SNARE coiled-coil homology domain.PROSITE-ProRule annotation

Keywords - Domaini

Coiled coil, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG0812. Eukaryota.
ENOG410Y2MB. LUCA.
HOGENOMiHOG000194860.
InParanoidiQ9LK09.
PhylomeDBiQ9LK09.

Family and domain databases

InterProiIPR006012. Syntaxin/epimorphin_CS.
IPR010989. t-SNARE.
IPR000727. T_SNARE_dom.
[Graphical view]
PfamiPF05739. SNARE. 1 hit.
[Graphical view]
SMARTiSM00397. t_SNARE. 1 hit.
[Graphical view]
SUPFAMiSSF47661. SSF47661. 2 hits.
PROSITEiPS00914. SYNTAXIN. 1 hit.
PS50192. T_SNARE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

This entry describes 1 isoform i produced by alternative splicing. AlignAdd to basket

Note: A number of isoforms are produced. According to EST sequences.

Isoform 1 (identifier: Q9LK09-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MSARHGQSSY RDRSDEFFKI VETLRRSIAP APAANNVPYG NNRNDGARRE
60 70 80 90 100
DLINKSEFNK RASHIGLAIN QTSQKLSKLA KLAKRTSVFD DPTQEIQELT
110 120 130 140 150
VVIKQEISAL NSALVDLQLF RSSQNDEGNN SRDRDKSTHS ATVVDDLKYR
160 170 180 190 200
LMDTTKEFKD VLTMRTENMK VHESRRQLFS SNASKESTNP FVRQRPLAAK
210 220 230 240 250
AAASESVPLP WANGSSSSSS QLVPWKPGEG ESSPLLQQSQ QQQQQQQQQM
260 270 280 290 300
VPLQDTYMQG RAEALHTVES TIHELSSIFT QLATMVSQQG EIAIRIDQNM
310 320 330 340
EDTLANVEGA QSQLARYLNS ISSNRWLMMK IFFVLIAFLM IFLFFVA
Length:347
Mass (Da):39,119
Last modified:October 1, 2000 - v1
Checksum:i1DF52CC9ED9CD6C0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP000382 Genomic DNA. Translation: BAB02935.1.
CP002686 Genomic DNA. Translation: AEE76892.1.
BT004300 mRNA. Translation: AAO42298.1.
BT008604 mRNA. Translation: AAP40429.1.
RefSeqiNP_189078.2. NM_113342.3. [Q9LK09-1]
UniGeneiAt.37543.

Genome annotation databases

EnsemblPlantsiAT3G24350.1; AT3G24350.1; AT3G24350. [Q9LK09-1]
GeneIDi822024.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP000382 Genomic DNA. Translation: BAB02935.1.
CP002686 Genomic DNA. Translation: AEE76892.1.
BT004300 mRNA. Translation: AAO42298.1.
BT008604 mRNA. Translation: AAP40429.1.
RefSeqiNP_189078.2. NM_113342.3. [Q9LK09-1]
UniGeneiAt.37543.

3D structure databases

ProteinModelPortaliQ9LK09.
SMRiQ9LK09. Positions 263-301.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi7356. 76 interactions.
IntActiQ9LK09. 76 interactions.
STRINGi3702.AT3G24350.2.

Proteomic databases

PaxDbiQ9LK09.
PRIDEiQ9LK09.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G24350.1; AT3G24350.1; AT3G24350. [Q9LK09-1]
GeneIDi822024.

Organism-specific databases

TAIRiAT3G24350.

Phylogenomic databases

eggNOGiKOG0812. Eukaryota.
ENOG410Y2MB. LUCA.
HOGENOMiHOG000194860.
InParanoidiQ9LK09.
PhylomeDBiQ9LK09.

Enzyme and pathway databases

ReactomeiR-ATH-204005. COPII (Coat Protein 2) Mediated Vesicle Transport.
R-ATH-5694530. Cargo concentration in the ER.
R-ATH-6807878. COPI-mediated anterograde transport.

Miscellaneous databases

PROiQ9LK09.

Gene expression databases

ExpressionAtlasiQ9LK09. baseline and differential.
GenevisibleiQ9LK09. AT.

Family and domain databases

InterProiIPR006012. Syntaxin/epimorphin_CS.
IPR010989. t-SNARE.
IPR000727. T_SNARE_dom.
[Graphical view]
PfamiPF05739. SNARE. 1 hit.
[Graphical view]
SMARTiSM00397. t_SNARE. 1 hit.
[Graphical view]
SUPFAMiSSF47661. SSF47661. 2 hits.
PROSITEiPS00914. SYNTAXIN. 1 hit.
PS50192. T_SNARE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC clones."
    Kaneko T., Katoh T., Sato S., Nakamura Y., Asamizu E., Tabata S.
    DNA Res. 7:217-221(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.

Entry informationi

Entry nameiSYP32_ARATH
AccessioniPrimary (citable) accession number: Q9LK09
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 12, 2003
Last sequence update: October 1, 2000
Last modified: February 17, 2016
This is version 103 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.