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Q9LIG0 (Y3136_ARATH) Reviewed, UniProtKB/Swiss-Prot

Last modified December 14, 2011. Version 63. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Clavaminate synthase-like protein At3g21360
EC=1.-.-.-
Gene names
Ordered Locus Names:At3g21360
ORF Names:MHC9_4
OrganismArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length330 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Cofactor

Binds 1 iron ion per subunit.

Miscellaneous

May use 2-oxoglutarate as a cosubstrate By similarity.

Ontologies

Keywords
   LigandIron
Metal-binding
   Molecular functionOxidoreductase
   Technical term3D-structure
Complete proteome
Reference proteome
Gene Ontology (GO)
   Cellular componentnucleus

Inferred from direct assay. Source: TAIR

   Molecular functionmetal ion binding

Inferred from electronic annotation. Source: UniProtKB-KW

oxidoreductase activity

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 330330Clavaminate synthase-like protein At3g21360
PRO_0000220604

Sites

Metal binding1201Iron
Metal binding1221Iron
Metal binding3131Iron

Secondary structure

1 ................................................................ 330
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
Q9LIG0 [UniParc].

Last modified October 1, 2000. Version 1.
Checksum: DE838BFFB70ADF2B

FASTA33037,212
        10         20         30         40         50         60 
MAELLLVETP IPQQKHYESK PFPAVISPPS ASIPIPALSL PLFTQTIKTQ KHYLDSLLHE 

        70         80         90        100        110        120 
SGAVLFRGFP VNSADDFNDV VEAFGFDELP YVGGAAPRTS VVGRVFTANE SPPDQKIPFH 

       130        140        150        160        170        180 
HEMAQVREFP SKLFFYCEIE PKCGGETPIV LSHVVYERMK DKHPEFVQRL EEHGLLYVRV 

       190        200        210        220        230        240 
LGEDDDPSSP IGRGWKSTFL THDKNLAEQR AVDLGMKLEW TEDGGAKTVM GPIPAIKYDE 

       250        260        270        280        290        300 
SRNRKVWFNS MVAAYTGWED KRNDPRKAVT FGDGKPLPAD IVHDCLRILE EECVAVPWQR 

       310        320        330 
GDVLLIDNWA VLHSRRPFDP PRRVLASLCK

« Hide

References

« Hide 'large scale' references
[1]"Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC clones."
Kaneko T., Katoh T., Sato S., Nakamura Y., Asamizu E., Tabata S.
DNA Res. 7:217-221(2000) [PubMed: 10907853] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[2]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Columbia.
[3]"Functional annotation of a full-length Arabidopsis cDNA collection."
Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T., Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y., Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K., Shinagawa A., Shinozaki K.
Science 296:141-145(2002) [PubMed: 11910074] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Columbia.
[4]"The structure at 2.4 A resolution of the protein from gene locus At3g21360, a putative FeII/2-oxoglutarate-dependent enzyme from Arabidopsis thaliana."
Bitto E., Bingman C.A., Allard S.T.M., Wesenberg G.E., Aceti D.J., Wrobel R.L., Frederick R.O., Sreenath H., Vojtik F.C., Jeon W.B., Newman C.S., Primm J., Sussman M.R., Fox B.G., Markley J.L., Phillips G.N. Jr.
Acta Crystallogr. F 61:469-472(2005) [PubMed: 16511070] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.4 ANGSTROMS) OF 1-330, IRON-BINDING.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AP001305 Genomic DNA. Translation: BAB03049.1.
CP002686 Genomic DNA. Translation: AEE76500.1.
AK117772 mRNA. Translation: BAC42419.1.
IPIIPI00537078.
RefSeqNP_188773.1. NM_113031.2.
UniGeneAt.47366.
At.63567.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1Y0ZX-ray2.40A/B1-330[»]
2Q4AX-ray2.39A/B1-330[»]
ProteinModelPortalQ9LIG0.
SMRQ9LIG0. Positions 4-330.
ModBaseSearch...

Proteomic databases

PRIDEQ9LIG0.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT3G21360.1; AT3G21360.1; AT3G21360.
GeneID821690.
GenomeReviewsGene locus AT3G21360 in contig BA000014_GR.
KEGGath:AT3G21360.
NMPDRfig|3702.1.peg.14371.

Organism-specific databases

TAIRAt3g21360.

Phylogenomic databases

GeneTreeEPGT00050000017398.
HOGENOMHBG592040.
InParanoidQ9LIG0.
OMANSMVAAY.
PhylomeDBQ9LIG0.
ProtClustDBCLSN2685103.

Gene expression databases

GenevestigatorQ9LIG0.
GermOnlineAT3G21360. Arabidopsis thaliana.

Family and domain databases

InterProIPR003819. Taurine_dOase.
[Graphical view]
PfamPF02668. TauD. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameY3136_ARATH
AccessionPrimary (citable) accession number: Q9LIG0
Entry history
Integrated into UniProtKB/Swiss-Prot: August 30, 2005
Last sequence update: October 1, 2000
Last modified: December 14, 2011
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

Arabidopsis thaliana

Arabidopsis thaliana: entries and gene names

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

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