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Protein

Clavaminate synthase-like protein At3g21360

Gene

At3g21360

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Miscellaneous

May use 2-oxoglutarate as a cosubstrate.By similarity

Cofactori

Fe cationNote: Binds 1 Fe cation per subunit.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi120Iron1
Metal bindingi122Iron1
Metal bindingi313Iron1

GO - Molecular functioni

Keywordsi

Molecular functionOxidoreductase
LigandIron, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Clavaminate synthase-like protein At3g21360 (EC:1.-.-.-)
Gene namesi
Ordered Locus Names:At3g21360
ORF Names:MHC9_4
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G21360.
TAIRilocus:2089423. AT3G21360.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedCombined sources
ChainiPRO_00002206042 – 330Clavaminate synthase-like protein At3g21360Add BLAST329

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei2N-acetylalanineCombined sources1

Keywords - PTMi

Acetylation

Proteomic databases

PaxDbiQ9LIG0.
PRIDEiQ9LIG0.

PTM databases

iPTMnetiQ9LIG0.

Expressioni

Gene expression databases

ExpressionAtlasiQ9LIG0. baseline and differential.
GenevisibleiQ9LIG0. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT3G21360.1.

Structurei

Secondary structure

1330
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi15 – 17Combined sources3
Beta strandi20 – 27Combined sources8
Helixi40 – 49Combined sources10
Helixi51 – 61Combined sources11
Beta strandi62 – 66Combined sources5
Helixi74 – 83Combined sources10
Beta strandi93 – 95Combined sources3
Beta strandi99 – 102Combined sources4
Beta strandi105 – 107Combined sources3
Beta strandi117 – 120Combined sources4
Turni122 – 125Combined sources4
Beta strandi126 – 128Combined sources3
Beta strandi131 – 139Combined sources9
Beta strandi142 – 144Combined sources3
Beta strandi149 – 151Combined sources3
Helixi152 – 162Combined sources11
Helixi164 – 173Combined sources10
Beta strandi175 – 181Combined sources7
Beta strandi183 – 185Combined sources3
Helixi195 – 198Combined sources4
Helixi204 – 213Combined sources10
Beta strandi217 – 220Combined sources4
Beta strandi226 – 233Combined sources8
Beta strandi235 – 239Combined sources5
Turni240 – 243Combined sources4
Beta strandi244 – 246Combined sources3
Helixi251 – 255Combined sources5
Helixi265 – 268Combined sources4
Beta strandi269 – 271Combined sources3
Helixi279 – 292Combined sources14
Beta strandi303 – 307Combined sources5
Turni308 – 310Combined sources3
Beta strandi311 – 315Combined sources5
Beta strandi318 – 320Combined sources3
Beta strandi323 – 329Combined sources7

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1Y0ZX-ray2.40A/B1-330[»]
2Q4AX-ray2.39A/B1-330[»]
ProteinModelPortaliQ9LIG0.
SMRiQ9LIG0.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9LIG0.

Family & Domainsi

Phylogenomic databases

eggNOGiENOG410IH28. Eukaryota.
ENOG410XPT7. LUCA.
HOGENOMiHOG000272702.
InParanoidiQ9LIG0.
OMAiLHNEQAY.
OrthoDBiEOG09360ERQ.
PhylomeDBiQ9LIG0.

Family and domain databases

InterProiView protein in InterPro
IPR003819. TauD/TfdA-like.
PfamiView protein in Pfam
PF02668. TauD. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9LIG0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAELLLVETP IPQQKHYESK PFPAVISPPS ASIPIPALSL PLFTQTIKTQ
60 70 80 90 100
KHYLDSLLHE SGAVLFRGFP VNSADDFNDV VEAFGFDELP YVGGAAPRTS
110 120 130 140 150
VVGRVFTANE SPPDQKIPFH HEMAQVREFP SKLFFYCEIE PKCGGETPIV
160 170 180 190 200
LSHVVYERMK DKHPEFVQRL EEHGLLYVRV LGEDDDPSSP IGRGWKSTFL
210 220 230 240 250
THDKNLAEQR AVDLGMKLEW TEDGGAKTVM GPIPAIKYDE SRNRKVWFNS
260 270 280 290 300
MVAAYTGWED KRNDPRKAVT FGDGKPLPAD IVHDCLRILE EECVAVPWQR
310 320 330
GDVLLIDNWA VLHSRRPFDP PRRVLASLCK
Length:330
Mass (Da):37,212
Last modified:October 1, 2000 - v1
Checksum:iDE838BFFB70ADF2B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP001305 Genomic DNA. Translation: BAB03049.1.
CP002686 Genomic DNA. Translation: AEE76500.1.
AK117772 mRNA. Translation: BAC42419.1.
RefSeqiNP_188773.1. NM_113031.2.
UniGeneiAt.47366.
At.63567.

Genome annotation databases

EnsemblPlantsiAT3G21360.1; AT3G21360.1; AT3G21360.
GeneIDi821690.
GrameneiAT3G21360.1; AT3G21360.1; AT3G21360.
KEGGiath:AT3G21360.

Similar proteinsi

Entry informationi

Entry nameiY3136_ARATH
AccessioniPrimary (citable) accession number: Q9LIG0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: August 30, 2005
Last sequence update: October 1, 2000
Last modified: June 7, 2017
This is version 97 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references