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Protein

ABC transporter E family member 1

Gene

ABCE1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi110 – 117ATPPROSITE-ProRule annotation8
Nucleotide bindingi381 – 388ATPPROSITE-ProRule annotation8

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processTransport
Ligand4Fe-4S, ATP-binding, Iron, Iron-sulfur, Metal-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
ABC transporter E family member 1
Short name:
ABC transporter ABCE.1
Short name:
AtABCE1
Alternative name(s):
RNase L inhibitor-like protein 1
Short name:
AtRLI1
Short name:
AthaRLI1
Gene namesi
Name:ABCE1
Synonyms:RLI1
Ordered Locus Names:At3g13640
ORF Names:MMM17.7
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G13640
TAIRilocus:2091506 AT3G13640

Subcellular locationi

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003791371 – 603ABC transporter E family member 1Add BLAST603

Proteomic databases

PaxDbiQ9LID6

Expressioni

Tissue specificityi

Expressed in roots, stems, leaves, flowers and siliques.1 Publication

Gene expression databases

ExpressionAtlasiQ9LID6 baseline and differential
GenevisibleiQ9LID6 AT

Interactioni

Protein-protein interaction databases

BioGridi5902, 1 interactor
IntActiQ9LID6, 1 interactor
STRINGi3702.AT3G13640.1

Structurei

3D structure databases

ProteinModelPortaliQ9LID6
SMRiQ9LID6
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini7 – 394Fe-4S ferredoxin-type 1PROSITE-ProRule annotationAdd BLAST33
Domaini46 – 754Fe-4S ferredoxin-type 2PROSITE-ProRule annotationAdd BLAST30
Domaini70 – 315ABC transporter 1PROSITE-ProRule annotationAdd BLAST246
Domaini344 – 566ABC transporter 2PROSITE-ProRule annotationAdd BLAST223

Sequence similaritiesi

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG0063 Eukaryota
COG1245 LUCA
HOGENOMiHOG000222803
InParanoidiQ9LID6
OMAiDAYMHPQ
OrthoDBiEOG093604PR
PhylomeDBiQ9LID6

Family and domain databases

CDDicd03236 ABC_RNaseL_inhibitor_domain1, 1 hit
InterProiView protein in InterPro
IPR017896 4Fe4S_Fe-S-bd
IPR017900 4Fe4S_Fe_S_CS
IPR003593 AAA+_ATPase
IPR003439 ABC_transporter-like
IPR017871 ABC_transporter_CS
IPR027417 P-loop_NTPase
IPR013283 RLI1
IPR034348 RLI_dom_1
IPR007209 RNaseL-inhib_metal-bd_dom
PANTHERiPTHR19248 PTHR19248, 1 hit
PfamiView protein in Pfam
PF00005 ABC_tran, 2 hits
PF00037 Fer4, 1 hit
PF04068 RLI, 1 hit
PRINTSiPR01868 ABCEFAMILY
SMARTiView protein in SMART
SM00382 AAA, 2 hits
SUPFAMiSSF52540 SSF52540, 2 hits
PROSITEiView protein in PROSITE
PS00198 4FE4S_FER_1, 1 hit
PS51379 4FE4S_FER_2, 2 hits
PS00211 ABC_TRANSPORTER_1, 1 hit
PS50893 ABC_TRANSPORTER_2, 2 hits

Sequencei

Sequence statusi: Complete.

Q9LID6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSDRLTRIAI VSEDRCKPKK CRQECKKSCP VVKTGKLCIE VGSTSKSAFI
60 70 80 90 100
SEELCIGCGI CVKKCPFEAI QIINLPKDLA KDTTHRYGAN GFKLHRLPIP
110 120 130 140 150
RPGQVLGLVG TNGIGKSTAL KILAGKLKPN LGRFNTPPDW EEILTHFRGS
160 170 180 190 200
ELQSYFIRVV EENLKTAIKP QHVDYIKEVV RGNLGKMLEK LDERGLMEEI
210 220 230 240 250
CADMELNQVL EREARQVSGG ELQRFAIAAV FVKKADIYMF DEPSSYLDVR
260 270 280 290 300
QRLKAAQVIR SLLRHDSYVI VVEHDLSVLD YLSDFVCCLY GKPGAYGVVT
310 320 330 340 350
LPFSVREGIN VFLAGFIPTE NLRFRDESLT FRVSETTQEN DGEVKSYARY
360 370 380 390 400
KYPNMTKQLG DFKLEVMEGE FTDSQIIVML GENGTGKTTF IRMLAGAFPR
410 420 430 440 450
EEGVQSEIPE FNVSYKPQGN DSKRECTVRQ LLHDKIRDAC AHPQFMSDVI
460 470 480 490 500
RPLQIEQLMD QVVKTLSGGE KQRVAITLCL GKPADIYLID EPSAHLDSEQ
510 520 530 540 550
RITASKVIKR FILHAKKTAF IVEHDFIMAT YLADRVIVYE GQPAVKCIAH
560 570 580 590 600
SPQSLLSGMN HFLSHLNITF RRDPTNFRPR INKLESIKDK EQKTAGSYYY

LDD
Length:603
Mass (Da):68,161
Last modified:October 1, 2000 - v1
Checksum:iB5DE663E568BF543
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP001307 Genomic DNA Translation: BAB01911.1
CP002686 Genomic DNA Translation: AEE75386.1
BT003947 mRNA Translation: AAO41992.1
BT005042 mRNA Translation: AAO50575.1
RefSeqiNP_187973.1, NM_112210.3
UniGeneiAt.43389

Genome annotation databases

EnsemblPlantsiAT3G13640.1; AT3G13640.1; AT3G13640
GeneIDi820568
GrameneiAT3G13640.1; AT3G13640.1; AT3G13640
KEGGiath:AT3G13640

Similar proteinsi

Entry informationi

Entry nameiAB1E_ARATH
AccessioniPrimary (citable) accession number: Q9LID6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 7, 2009
Last sequence update: October 1, 2000
Last modified: April 25, 2018
This is version 114 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health