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Protein

ABC transporter E family member 1

Gene

ABCE1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi110 – 117ATPPROSITE-ProRule annotation8
Nucleotide bindingi381 – 388ATPPROSITE-ProRule annotation8

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transport

Keywords - Ligandi

4Fe-4S, ATP-binding, Iron, Iron-sulfur, Metal-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
ABC transporter E family member 1
Short name:
ABC transporter ABCE.1
Short name:
AtABCE1
Alternative name(s):
RNase L inhibitor-like protein 1
Short name:
AtRLI1
Short name:
AthaRLI1
Gene namesi
Name:ABCE1
Synonyms:RLI1
Ordered Locus Names:At3g13640
ORF Names:MMM17.7
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

TAIRiAT3G13640.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003791371 – 603ABC transporter E family member 1Add BLAST603

Proteomic databases

PaxDbiQ9LID6.

Expressioni

Tissue specificityi

Expressed in roots, stems, leaves, flowers and siliques.1 Publication

Gene expression databases

GenevisibleiQ9LID6. AT.

Interactioni

Protein-protein interaction databases

BioGridi5902. 1 interactor.
IntActiQ9LID6. 1 interactor.
STRINGi3702.AT3G13640.1.

Structurei

3D structure databases

ProteinModelPortaliQ9LID6.
SMRiQ9LID6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini7 – 394Fe-4S ferredoxin-type 1PROSITE-ProRule annotationAdd BLAST33
Domaini46 – 754Fe-4S ferredoxin-type 2PROSITE-ProRule annotationAdd BLAST30
Domaini70 – 315ABC transporter 1PROSITE-ProRule annotationAdd BLAST246
Domaini344 – 566ABC transporter 2PROSITE-ProRule annotationAdd BLAST223

Sequence similaritiesi

Contains 2 4Fe-4S ferredoxin-type domains.PROSITE-ProRule annotation
Contains 2 ABC transporter domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG0063. Eukaryota.
COG1245. LUCA.
HOGENOMiHOG000222803.
InParanoidiQ9LID6.
OMAiIKPQHVD.
OrthoDBiEOG093604PR.
PhylomeDBiQ9LID6.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR017896. 4Fe4S_Fe-S-bd.
IPR017900. 4Fe4S_Fe_S_CS.
IPR003593. AAA+_ATPase.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR013283. ABCE.
IPR027417. P-loop_NTPase.
IPR007209. RNaseL-inhib_metal-bd_dom.
[Graphical view]
PANTHERiPTHR19248. PTHR19248. 1 hit.
PfamiPF00005. ABC_tran. 2 hits.
PF00037. Fer4. 1 hit.
PF04068. RLI. 1 hit.
[Graphical view]
PRINTSiPR01868. ABCEFAMILY.
SMARTiSM00382. AAA. 2 hits.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
PROSITEiPS00198. 4FE4S_FER_1. 1 hit.
PS51379. 4FE4S_FER_2. 2 hits.
PS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9LID6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSDRLTRIAI VSEDRCKPKK CRQECKKSCP VVKTGKLCIE VGSTSKSAFI
60 70 80 90 100
SEELCIGCGI CVKKCPFEAI QIINLPKDLA KDTTHRYGAN GFKLHRLPIP
110 120 130 140 150
RPGQVLGLVG TNGIGKSTAL KILAGKLKPN LGRFNTPPDW EEILTHFRGS
160 170 180 190 200
ELQSYFIRVV EENLKTAIKP QHVDYIKEVV RGNLGKMLEK LDERGLMEEI
210 220 230 240 250
CADMELNQVL EREARQVSGG ELQRFAIAAV FVKKADIYMF DEPSSYLDVR
260 270 280 290 300
QRLKAAQVIR SLLRHDSYVI VVEHDLSVLD YLSDFVCCLY GKPGAYGVVT
310 320 330 340 350
LPFSVREGIN VFLAGFIPTE NLRFRDESLT FRVSETTQEN DGEVKSYARY
360 370 380 390 400
KYPNMTKQLG DFKLEVMEGE FTDSQIIVML GENGTGKTTF IRMLAGAFPR
410 420 430 440 450
EEGVQSEIPE FNVSYKPQGN DSKRECTVRQ LLHDKIRDAC AHPQFMSDVI
460 470 480 490 500
RPLQIEQLMD QVVKTLSGGE KQRVAITLCL GKPADIYLID EPSAHLDSEQ
510 520 530 540 550
RITASKVIKR FILHAKKTAF IVEHDFIMAT YLADRVIVYE GQPAVKCIAH
560 570 580 590 600
SPQSLLSGMN HFLSHLNITF RRDPTNFRPR INKLESIKDK EQKTAGSYYY

LDD
Length:603
Mass (Da):68,161
Last modified:October 1, 2000 - v1
Checksum:iB5DE663E568BF543
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP001307 Genomic DNA. Translation: BAB01911.1.
CP002686 Genomic DNA. Translation: AEE75386.1.
BT003947 mRNA. Translation: AAO41992.1.
BT005042 mRNA. Translation: AAO50575.1.
RefSeqiNP_187973.1. NM_112210.3.
UniGeneiAt.43389.

Genome annotation databases

EnsemblPlantsiAT3G13640.1; AT3G13640.1; AT3G13640.
GeneIDi820568.
GrameneiAT3G13640.1; AT3G13640.1; AT3G13640.
KEGGiath:AT3G13640.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP001307 Genomic DNA. Translation: BAB01911.1.
CP002686 Genomic DNA. Translation: AEE75386.1.
BT003947 mRNA. Translation: AAO41992.1.
BT005042 mRNA. Translation: AAO50575.1.
RefSeqiNP_187973.1. NM_112210.3.
UniGeneiAt.43389.

3D structure databases

ProteinModelPortaliQ9LID6.
SMRiQ9LID6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi5902. 1 interactor.
IntActiQ9LID6. 1 interactor.
STRINGi3702.AT3G13640.1.

Proteomic databases

PaxDbiQ9LID6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G13640.1; AT3G13640.1; AT3G13640.
GeneIDi820568.
GrameneiAT3G13640.1; AT3G13640.1; AT3G13640.
KEGGiath:AT3G13640.

Organism-specific databases

TAIRiAT3G13640.

Phylogenomic databases

eggNOGiKOG0063. Eukaryota.
COG1245. LUCA.
HOGENOMiHOG000222803.
InParanoidiQ9LID6.
OMAiIKPQHVD.
OrthoDBiEOG093604PR.
PhylomeDBiQ9LID6.

Miscellaneous databases

PROiQ9LID6.

Gene expression databases

GenevisibleiQ9LID6. AT.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR017896. 4Fe4S_Fe-S-bd.
IPR017900. 4Fe4S_Fe_S_CS.
IPR003593. AAA+_ATPase.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR013283. ABCE.
IPR027417. P-loop_NTPase.
IPR007209. RNaseL-inhib_metal-bd_dom.
[Graphical view]
PANTHERiPTHR19248. PTHR19248. 1 hit.
PfamiPF00005. ABC_tran. 2 hits.
PF00037. Fer4. 1 hit.
PF04068. RLI. 1 hit.
[Graphical view]
PRINTSiPR01868. ABCEFAMILY.
SMARTiSM00382. AAA. 2 hits.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
PROSITEiPS00198. 4FE4S_FER_1. 1 hit.
PS51379. 4FE4S_FER_2. 2 hits.
PS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 2 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiAB1E_ARATH
AccessioniPrimary (citable) accession number: Q9LID6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 7, 2009
Last sequence update: October 1, 2000
Last modified: November 30, 2016
This is version 106 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.