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Protein

GATA transcription factor 17

Gene

GATA17

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri38 – 9255GATA-typePROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding, Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
GATA transcription factor 17
Gene namesi
Name:GATA17
Ordered Locus Names:At3g16870
ORF Names:MUH15.3
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

TAIRiAT3G16870.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 190190GATA transcription factor 17PRO_0000083446Add
BLAST

Proteomic databases

PaxDbiQ9LIB5.

Expressioni

Gene expression databases

ExpressionAtlasiQ9LIB5. baseline and differential.
GenevisibleiQ9LIB5. AT.

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi3702.AT3G16870.1.

Structurei

3D structure databases

ProteinModelPortaliQ9LIB5.
SMRiQ9LIB5. Positions 43-77.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi134 – 1396Poly-Ser

Sequence similaritiesi

Contains 1 GATA-type zinc finger.PROSITE-ProRule annotation

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri38 – 9255GATA-typePROSITE-ProRule annotationAdd
BLAST

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiKOG1601. Eukaryota.
COG5641. LUCA.
HOGENOMiHOG000237836.
InParanoidiQ9LIB5.
OMAiDCGTIRT.
OrthoDBiEOG09360T7Z.
PhylomeDBiQ9LIB5.

Family and domain databases

Gene3Di3.30.50.10. 1 hit.
InterProiIPR000679. Znf_GATA.
IPR013088. Znf_NHR/GATA.
[Graphical view]
PfamiPF00320. GATA. 1 hit.
[Graphical view]
SMARTiSM00401. ZnF_GATA. 1 hit.
[Graphical view]
PROSITEiPS00344. GATA_ZN_FINGER_1. 1 hit.
PS50114. GATA_ZN_FINGER_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9LIB5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSEGSEDTKT KLDSAGELSD VDNENCSSSG SGGGSSSGDT KRTCVDCGTI
60 70 80 90 100
RTPLWRGGPA GPKSLCNACG IKSRKKRQAA LGMRSEEKKK NRKSNCNNDL
110 120 130 140 150
NLDHRNAKKY KINIVDDGKI DIDDDPKICN NKRSSSSSSN KGVSKFLDLG
160 170 180 190
FKVPVMKRSA VEKKRLWRKL GEEERAAVLL MALSCSSVYA
Length:190
Mass (Da):20,610
Last modified:October 1, 2000 - v1
Checksum:iC1499812E70B9351
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP001308 Genomic DNA. Translation: BAB03075.1.
CP002686 Genomic DNA. Translation: AEE75878.1.
BT010844 mRNA. Translation: AAR24211.1.
BT012611 mRNA. Translation: AAT06430.1.
RefSeqiNP_188312.1. NM_112563.2.
UniGeneiAt.38827.

Genome annotation databases

EnsemblPlantsiAT3G16870.1; AT3G16870.1; AT3G16870.
GeneIDi820942.
GrameneiAT3G16870.1; AT3G16870.1; AT3G16870.
KEGGiath:AT3G16870.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP001308 Genomic DNA. Translation: BAB03075.1.
CP002686 Genomic DNA. Translation: AEE75878.1.
BT010844 mRNA. Translation: AAR24211.1.
BT012611 mRNA. Translation: AAT06430.1.
RefSeqiNP_188312.1. NM_112563.2.
UniGeneiAt.38827.

3D structure databases

ProteinModelPortaliQ9LIB5.
SMRiQ9LIB5. Positions 43-77.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT3G16870.1.

Proteomic databases

PaxDbiQ9LIB5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G16870.1; AT3G16870.1; AT3G16870.
GeneIDi820942.
GrameneiAT3G16870.1; AT3G16870.1; AT3G16870.
KEGGiath:AT3G16870.

Organism-specific databases

TAIRiAT3G16870.

Phylogenomic databases

eggNOGiKOG1601. Eukaryota.
COG5641. LUCA.
HOGENOMiHOG000237836.
InParanoidiQ9LIB5.
OMAiDCGTIRT.
OrthoDBiEOG09360T7Z.
PhylomeDBiQ9LIB5.

Miscellaneous databases

PROiQ9LIB5.

Gene expression databases

ExpressionAtlasiQ9LIB5. baseline and differential.
GenevisibleiQ9LIB5. AT.

Family and domain databases

Gene3Di3.30.50.10. 1 hit.
InterProiIPR000679. Znf_GATA.
IPR013088. Znf_NHR/GATA.
[Graphical view]
PfamiPF00320. GATA. 1 hit.
[Graphical view]
SMARTiSM00401. ZnF_GATA. 1 hit.
[Graphical view]
PROSITEiPS00344. GATA_ZN_FINGER_1. 1 hit.
PS50114. GATA_ZN_FINGER_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiGAT17_ARATH
AccessioniPrimary (citable) accession number: Q9LIB5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 10, 2005
Last sequence update: October 1, 2000
Last modified: September 7, 2016
This is version 91 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.