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Protein

GATA transcription factor 17

Gene

GATA17

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri38 – 92GATA-typePROSITE-ProRule annotationAdd BLAST55

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
GATA transcription factor 17
Gene namesi
Name:GATA17
Ordered Locus Names:At3g16870
ORF Names:MUH15.3
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G16870
TAIRilocus:2093678 AT3G16870

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000834461 – 190GATA transcription factor 17Add BLAST190

Proteomic databases

PaxDbiQ9LIB5

Expressioni

Gene expression databases

ExpressionAtlasiQ9LIB5 baseline and differential
GenevisibleiQ9LIB5 AT

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

IntActiQ9LIB5, 9 interactors
STRINGi3702.AT3G16870.1

Structurei

3D structure databases

ProteinModelPortaliQ9LIB5
SMRiQ9LIB5
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi134 – 139Poly-Ser6

Sequence similaritiesi

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri38 – 92GATA-typePROSITE-ProRule annotationAdd BLAST55

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiKOG1601 Eukaryota
COG5641 LUCA
HOGENOMiHOG000237836
InParanoidiQ9LIB5
OMAiGMRSEEK
OrthoDBiEOG09360T7Z
PhylomeDBiQ9LIB5

Family and domain databases

Gene3Di3.30.50.10, 1 hit
InterProiView protein in InterPro
IPR000679 Znf_GATA
IPR013088 Znf_NHR/GATA
PfamiView protein in Pfam
PF00320 GATA, 1 hit
SMARTiView protein in SMART
SM00401 ZnF_GATA, 1 hit
PROSITEiView protein in PROSITE
PS00344 GATA_ZN_FINGER_1, 1 hit
PS50114 GATA_ZN_FINGER_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q9LIB5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSEGSEDTKT KLDSAGELSD VDNENCSSSG SGGGSSSGDT KRTCVDCGTI
60 70 80 90 100
RTPLWRGGPA GPKSLCNACG IKSRKKRQAA LGMRSEEKKK NRKSNCNNDL
110 120 130 140 150
NLDHRNAKKY KINIVDDGKI DIDDDPKICN NKRSSSSSSN KGVSKFLDLG
160 170 180 190
FKVPVMKRSA VEKKRLWRKL GEEERAAVLL MALSCSSVYA
Length:190
Mass (Da):20,610
Last modified:October 1, 2000 - v1
Checksum:iC1499812E70B9351
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP001308 Genomic DNA Translation: BAB03075.1
CP002686 Genomic DNA Translation: AEE75878.1
BT010844 mRNA Translation: AAR24211.1
BT012611 mRNA Translation: AAT06430.1
RefSeqiNP_188312.1, NM_112563.3
UniGeneiAt.38827

Genome annotation databases

EnsemblPlantsiAT3G16870.1; AT3G16870.1; AT3G16870
GeneIDi820942
GrameneiAT3G16870.1; AT3G16870.1; AT3G16870
KEGGiath:AT3G16870

Similar proteinsi

Entry informationi

Entry nameiGAT17_ARATH
AccessioniPrimary (citable) accession number: Q9LIB5
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 10, 2005
Last sequence update: October 1, 2000
Last modified: April 25, 2018
This is version 100 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health