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Protein

Putative pentatricopeptide repeat-containing protein At3g18840

Gene

PCMP-E92

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Putative pentatricopeptide repeat-containing protein At3g18840
Gene namesi
Name:PCMP-E92
Ordered Locus Names:At3g18840
ORF Names:MCB22.1
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

TAIRiAT3G18840.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 678678Putative pentatricopeptide repeat-containing protein At3g18840PRO_0000356101Add
BLAST

Proteomic databases

PaxDbiQ9LHN5.
PRIDEiQ9LHN5.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT3G18840.2.

Structurei

3D structure databases

ProteinModelPortaliQ9LHN5.
SMRiQ9LHN5. Positions 16-626.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati22 – 5635PPR 1Add
BLAST
Repeati57 – 8428PPR 2Add
BLAST
Repeati85 – 11632PPR 3Add
BLAST
Repeati124 – 15835PPR 4Add
BLAST
Repeati159 – 19032PPR 5Add
BLAST
Repeati192 – 22231PPR 6Add
BLAST
Repeati224 – 25835PPR 7Add
BLAST
Repeati259 – 29335PPR 8Add
BLAST
Repeati294 – 32431PPR 9Add
BLAST
Repeati325 – 35935PPR 10Add
BLAST
Repeati360 – 39031PPR 11Add
BLAST
Repeati392 – 42635PPR 12Add
BLAST
Repeati427 – 45731PPR 13Add
BLAST
Repeati458 – 49235PPR 14Add
BLAST
Repeati493 – 52836PPR 15Add
BLAST
Repeati529 – 56335PPR 16Add
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni565 – 64076Type E motifAdd
BLAST
Regioni641 – 67131Type E(+) motifAdd
BLAST

Sequence similaritiesi

Belongs to the PPR family. PCMP-E subfamily.Curated
Contains 16 PPR (pentatricopeptide) repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000115629.
InParanoidiQ9LHN5.
OMAiGCESEAI.
PhylomeDBiQ9LHN5.

Family and domain databases

Gene3Di1.25.40.10. 4 hits.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF01535. PPR. 9 hits.
PF13041. PPR_2. 2 hits.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 6 hits.
PROSITEiPS51375. PPR. 12 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9LHN5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKCLKDGFLH HIRSIKSGST LTAVSSNQLV NLYSKSGLLR EARNVFDEML
60 70 80 90 100
ERNVYSWNAV IAAYVKFNNV KEARELFESD NCERDLITYN TLLSGFAKTD
110 120 130 140 150
GCESEAIEMF GEMHRKEKDD IWIDDFTVTT MVKLSAKLTN VFYGEQLHGV
160 170 180 190 200
LVKTGNDGTK FAVSSLIHMY SKCGKFKEVC NIFNGSCVEF VDSVARNAMI
210 220 230 240 250
AAYCREGDID KALSVFWRNP ELNDTISWNT LIAGYAQNGY EEEALKMAVS
260 270 280 290 300
MEENGLKWDE HSFGAVLNVL SSLKSLKIGK EVHARVLKNG SYSNKFVSSG
310 320 330 340 350
IVDVYCKCGN MKYAESAHLL YGFGNLYSAS SMIVGYSSQG KMVEAKRLFD
360 370 380 390 400
SLSEKNLVVW TAMFLGYLNL RQPDSVLELA RAFIANETNT PDSLVMVSVL
410 420 430 440 450
GACSLQAYME PGKEIHGHSL RTGILMDKKL VTAFVDMYSK CGNVEYAERI
460 470 480 490 500
FDSSFERDTV MYNAMIAGCA HHGHEAKSFQ HFEDMTEGGF KPDEITFMAL
510 520 530 540 550
LSACRHRGLV LEGEKYFKSM IEAYNISPET GHYTCMIDLY GKAYRLDKAI
560 570 580 590 600
ELMEGIDQVE KDAVILGAFL NACSWNKNTE LVKEVEEKLL VIEGSNGSRY
610 620 630 640 650
IQIANAYASS GRWDEMQRIR HQMRGKELEI FSGCSWANID KQFHMFTSSD
660 670
ISHYETEAIY AMLHFVTKDL SEIDEIMI
Length:678
Mass (Da):76,416
Last modified:October 1, 2000 - v1
Checksum:i0DF2BE1DB5FE1AFF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP002039 Genomic DNA. Translation: BAB03093.1.
CP002686 Genomic DNA. Translation: AEE76154.1.
RefSeqiNP_001078182.2. NM_001084713.2.
UniGeneiAt.72180.

Genome annotation databases

EnsemblPlantsiAT3G18840.2; AT3G18840.2; AT3G18840.
GeneIDi821417.
GrameneiAT3G18840.2; AT3G18840.2; AT3G18840.
KEGGiath:AT3G18840.

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP002039 Genomic DNA. Translation: BAB03093.1.
CP002686 Genomic DNA. Translation: AEE76154.1.
RefSeqiNP_001078182.2. NM_001084713.2.
UniGeneiAt.72180.

3D structure databases

ProteinModelPortaliQ9LHN5.
SMRiQ9LHN5. Positions 16-626.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT3G18840.2.

Proteomic databases

PaxDbiQ9LHN5.
PRIDEiQ9LHN5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G18840.2; AT3G18840.2; AT3G18840.
GeneIDi821417.
GrameneiAT3G18840.2; AT3G18840.2; AT3G18840.
KEGGiath:AT3G18840.

Organism-specific databases

TAIRiAT3G18840.

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000115629.
InParanoidiQ9LHN5.
OMAiGCESEAI.
PhylomeDBiQ9LHN5.

Miscellaneous databases

PROiQ9LHN5.

Family and domain databases

Gene3Di1.25.40.10. 4 hits.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF01535. PPR. 9 hits.
PF13041. PPR_2. 2 hits.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 6 hits.
PROSITEiPS51375. PPR. 12 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC clones."
    Kaneko T., Katoh T., Sato S., Nakamura Y., Asamizu E., Tabata S.
    DNA Res. 7:217-221(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis."
    Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C., Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M., Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B., Taconnat L., Small I.
    Plant Cell 16:2089-2103(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY.

Entry informationi

Entry nameiPP242_ARATH
AccessioniPrimary (citable) accession number: Q9LHN5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 16, 2008
Last sequence update: October 1, 2000
Last modified: February 17, 2016
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.