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Protein

Putative pentatricopeptide repeat-containing protein At3g18840

Gene

PCMP-E92

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Putative pentatricopeptide repeat-containing protein At3g18840
Gene namesi
Name:PCMP-E92
Ordered Locus Names:At3g18840
ORF Names:MCB22.1
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

TAIRiAT3G18840.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003561011 – 678Putative pentatricopeptide repeat-containing protein At3g18840Add BLAST678

Proteomic databases

PaxDbiQ9LHN5.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT3G18840.2.

Structurei

3D structure databases

ProteinModelPortaliQ9LHN5.
SMRiQ9LHN5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati22 – 56PPR 1Add BLAST35
Repeati57 – 84PPR 2Add BLAST28
Repeati85 – 116PPR 3Add BLAST32
Repeati124 – 158PPR 4Add BLAST35
Repeati159 – 190PPR 5Add BLAST32
Repeati192 – 222PPR 6Add BLAST31
Repeati224 – 258PPR 7Add BLAST35
Repeati259 – 293PPR 8Add BLAST35
Repeati294 – 324PPR 9Add BLAST31
Repeati325 – 359PPR 10Add BLAST35
Repeati360 – 390PPR 11Add BLAST31
Repeati392 – 426PPR 12Add BLAST35
Repeati427 – 457PPR 13Add BLAST31
Repeati458 – 492PPR 14Add BLAST35
Repeati493 – 528PPR 15Add BLAST36
Repeati529 – 563PPR 16Add BLAST35

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni565 – 640Type E motifAdd BLAST76
Regioni641 – 671Type E(+) motifAdd BLAST31

Sequence similaritiesi

Belongs to the PPR family. PCMP-E subfamily.Curated
Contains 16 PPR (pentatricopeptide) repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000115629.
InParanoidiQ9LHN5.
OMAiGCESEAI.
OrthoDBiEOG09360AJK.
PhylomeDBiQ9LHN5.

Family and domain databases

Gene3Di1.25.40.10. 4 hits.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF01535. PPR. 9 hits.
PF13041. PPR_2. 2 hits.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 6 hits.
PROSITEiPS51375. PPR. 12 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9LHN5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKCLKDGFLH HIRSIKSGST LTAVSSNQLV NLYSKSGLLR EARNVFDEML
60 70 80 90 100
ERNVYSWNAV IAAYVKFNNV KEARELFESD NCERDLITYN TLLSGFAKTD
110 120 130 140 150
GCESEAIEMF GEMHRKEKDD IWIDDFTVTT MVKLSAKLTN VFYGEQLHGV
160 170 180 190 200
LVKTGNDGTK FAVSSLIHMY SKCGKFKEVC NIFNGSCVEF VDSVARNAMI
210 220 230 240 250
AAYCREGDID KALSVFWRNP ELNDTISWNT LIAGYAQNGY EEEALKMAVS
260 270 280 290 300
MEENGLKWDE HSFGAVLNVL SSLKSLKIGK EVHARVLKNG SYSNKFVSSG
310 320 330 340 350
IVDVYCKCGN MKYAESAHLL YGFGNLYSAS SMIVGYSSQG KMVEAKRLFD
360 370 380 390 400
SLSEKNLVVW TAMFLGYLNL RQPDSVLELA RAFIANETNT PDSLVMVSVL
410 420 430 440 450
GACSLQAYME PGKEIHGHSL RTGILMDKKL VTAFVDMYSK CGNVEYAERI
460 470 480 490 500
FDSSFERDTV MYNAMIAGCA HHGHEAKSFQ HFEDMTEGGF KPDEITFMAL
510 520 530 540 550
LSACRHRGLV LEGEKYFKSM IEAYNISPET GHYTCMIDLY GKAYRLDKAI
560 570 580 590 600
ELMEGIDQVE KDAVILGAFL NACSWNKNTE LVKEVEEKLL VIEGSNGSRY
610 620 630 640 650
IQIANAYASS GRWDEMQRIR HQMRGKELEI FSGCSWANID KQFHMFTSSD
660 670
ISHYETEAIY AMLHFVTKDL SEIDEIMI
Length:678
Mass (Da):76,416
Last modified:October 1, 2000 - v1
Checksum:i0DF2BE1DB5FE1AFF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP002039 Genomic DNA. Translation: BAB03093.1.
CP002686 Genomic DNA. Translation: AEE76154.1.
RefSeqiNP_001078182.2. NM_001084713.3.

Genome annotation databases

EnsemblPlantsiAT3G18840.2; AT3G18840.2; AT3G18840.
GeneIDi821417.
GrameneiAT3G18840.2; AT3G18840.2; AT3G18840.
KEGGiath:AT3G18840.

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP002039 Genomic DNA. Translation: BAB03093.1.
CP002686 Genomic DNA. Translation: AEE76154.1.
RefSeqiNP_001078182.2. NM_001084713.3.

3D structure databases

ProteinModelPortaliQ9LHN5.
SMRiQ9LHN5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT3G18840.2.

Proteomic databases

PaxDbiQ9LHN5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G18840.2; AT3G18840.2; AT3G18840.
GeneIDi821417.
GrameneiAT3G18840.2; AT3G18840.2; AT3G18840.
KEGGiath:AT3G18840.

Organism-specific databases

TAIRiAT3G18840.

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000115629.
InParanoidiQ9LHN5.
OMAiGCESEAI.
OrthoDBiEOG09360AJK.
PhylomeDBiQ9LHN5.

Miscellaneous databases

PROiQ9LHN5.

Family and domain databases

Gene3Di1.25.40.10. 4 hits.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF01535. PPR. 9 hits.
PF13041. PPR_2. 2 hits.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 6 hits.
PROSITEiPS51375. PPR. 12 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiPP242_ARATH
AccessioniPrimary (citable) accession number: Q9LHN5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 16, 2008
Last sequence update: October 1, 2000
Last modified: November 30, 2016
This is version 82 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.