Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Putative pentatricopeptide repeat-containing protein At3g18840

Gene

PCMP-E92

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Putative pentatricopeptide repeat-containing protein At3g18840
Gene namesi
Name:PCMP-E92
Ordered Locus Names:At3g18840
ORF Names:MCB22.1
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G18840
TAIRilocus:2087911 AT3G18840

Subcellular locationi

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003561011 – 678Putative pentatricopeptide repeat-containing protein At3g18840Add BLAST678

Proteomic databases

PaxDbiQ9LHN5

Expressioni

Gene expression databases

ExpressionAtlasiQ9LHN5 differential

Interactioni

Protein-protein interaction databases

STRINGi3702.AT3G18840.2

Structurei

3D structure databases

ProteinModelPortaliQ9LHN5
SMRiQ9LHN5
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati22 – 56PPR 1Add BLAST35
Repeati57 – 84PPR 2Add BLAST28
Repeati85 – 116PPR 3Add BLAST32
Repeati124 – 158PPR 4Add BLAST35
Repeati159 – 190PPR 5Add BLAST32
Repeati192 – 222PPR 6Add BLAST31
Repeati224 – 258PPR 7Add BLAST35
Repeati259 – 293PPR 8Add BLAST35
Repeati294 – 324PPR 9Add BLAST31
Repeati325 – 359PPR 10Add BLAST35
Repeati360 – 390PPR 11Add BLAST31
Repeati392 – 426PPR 12Add BLAST35
Repeati427 – 457PPR 13Add BLAST31
Repeati458 – 492PPR 14Add BLAST35
Repeati493 – 528PPR 15Add BLAST36
Repeati529 – 563PPR 16Add BLAST35

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni565 – 640Type E motifAdd BLAST76
Regioni641 – 671Type E(+) motifAdd BLAST31

Sequence similaritiesi

Belongs to the PPR family. PCMP-E subfamily.Curated

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000115629
InParanoidiQ9LHN5
OMAiYCREGDI
OrthoDBiEOG09360AJK
PhylomeDBiQ9LHN5

Family and domain databases

Gene3Di1.25.40.10, 5 hits
InterProiView protein in InterPro
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF01535 PPR, 9 hits
PF13041 PPR_2, 2 hits
TIGRFAMsiTIGR00756 PPR, 6 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 12 hits

Sequencei

Sequence statusi: Complete.

Q9LHN5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKCLKDGFLH HIRSIKSGST LTAVSSNQLV NLYSKSGLLR EARNVFDEML
60 70 80 90 100
ERNVYSWNAV IAAYVKFNNV KEARELFESD NCERDLITYN TLLSGFAKTD
110 120 130 140 150
GCESEAIEMF GEMHRKEKDD IWIDDFTVTT MVKLSAKLTN VFYGEQLHGV
160 170 180 190 200
LVKTGNDGTK FAVSSLIHMY SKCGKFKEVC NIFNGSCVEF VDSVARNAMI
210 220 230 240 250
AAYCREGDID KALSVFWRNP ELNDTISWNT LIAGYAQNGY EEEALKMAVS
260 270 280 290 300
MEENGLKWDE HSFGAVLNVL SSLKSLKIGK EVHARVLKNG SYSNKFVSSG
310 320 330 340 350
IVDVYCKCGN MKYAESAHLL YGFGNLYSAS SMIVGYSSQG KMVEAKRLFD
360 370 380 390 400
SLSEKNLVVW TAMFLGYLNL RQPDSVLELA RAFIANETNT PDSLVMVSVL
410 420 430 440 450
GACSLQAYME PGKEIHGHSL RTGILMDKKL VTAFVDMYSK CGNVEYAERI
460 470 480 490 500
FDSSFERDTV MYNAMIAGCA HHGHEAKSFQ HFEDMTEGGF KPDEITFMAL
510 520 530 540 550
LSACRHRGLV LEGEKYFKSM IEAYNISPET GHYTCMIDLY GKAYRLDKAI
560 570 580 590 600
ELMEGIDQVE KDAVILGAFL NACSWNKNTE LVKEVEEKLL VIEGSNGSRY
610 620 630 640 650
IQIANAYASS GRWDEMQRIR HQMRGKELEI FSGCSWANID KQFHMFTSSD
660 670
ISHYETEAIY AMLHFVTKDL SEIDEIMI
Length:678
Mass (Da):76,416
Last modified:October 1, 2000 - v1
Checksum:i0DF2BE1DB5FE1AFF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP002039 Genomic DNA Translation: BAB03093.1
CP002686 Genomic DNA Translation: AEE76154.1
CP002686 Genomic DNA Translation: ANM63363.1
RefSeqiNP_001078182.2, NM_001084713.3
NP_001325455.1, NM_001338360.1

Genome annotation databases

EnsemblPlantsiAT3G18840.2; AT3G18840.2; AT3G18840
AT3G18840.3; AT3G18840.3; AT3G18840
GeneIDi821417
GrameneiAT3G18840.2; AT3G18840.2; AT3G18840
AT3G18840.3; AT3G18840.3; AT3G18840
KEGGiath:AT3G18840

Similar proteinsi

Entry informationi

Entry nameiPP242_ARATH
AccessioniPrimary (citable) accession number: Q9LHN5
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 16, 2008
Last sequence update: October 1, 2000
Last modified: May 23, 2018
This is version 91 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health