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Q9LHH5 (Q9LHH5_ARATH) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 74. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

Putative uncharacterized protein At3g12320 EMBL AAK28634.1

Putative uncharacterized protein F28J15.9 EMBL AAG51066.1

Putative uncharacterized protein T2E22.34 EMBL AAG51013.1

Uncharacterized protein EMBL AEE75183.1
Gene names
Name:T2E22.34 EMBL AAG51013.1
Synonyms:F28J15.9 EMBL AAG51066.1
Ordered Locus Names:AT3G12320 EMBL AEE75183.1, At3g12320 TAIR AT3G12320
OrganismArabidopsis thaliana (Mouse-ear cress) [Reference proteome] EMBL BAB03140.1
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis

Protein attributes

Sequence length269 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processcircadian rhythm

Inferred from expression pattern PubMed 21499259. Source: TAIR

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q9LHH5 [UniParc].

Last modified October 1, 2000. Version 1.
Checksum: 52F0D62365FEEE34

FASTA26930,554
        10         20         30         40         50         60 
MDCYAEELVV PNYQESSSET YPSTGMWGGW SMSSPEAAEK CFDYDGFNGE GMMYSQMSMR 

        70         80         90        100        110        120 
TSEEEEESKR SKAFYGASSL HDFEGIEQMD DMFLSSILED VPEDDGDVHR ATSSNNSVGS 

       130        140        150        160        170        180 
SSMYGGGREV PMFHCHDMSF KEEAPFTISD LSEENMLDSN YGDELSSEEF VLQDLQRASQ 

       190        200        210        220        230        240 
KLTDETRKCF RDTFYRLARS SQDKSDSVSP NSEELLMQTS RYDYGDGNRF SREEEIESET 

       250        260 
NSIDRAVANL TFNKMESNIS NFPLSERVQ 

« Hide

References

« Hide 'large scale' references
[1]"Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC clones."
Nakamura Y.
DNA Res. 7:217-221(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[2]"Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana."
European Union Chromosome 3 Arabidopsis Sequencing Consortium, Institute for Genomic Research, Kazusa DNA Research Institute
Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F. expand/collapse author list , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
Nature 408:820-822(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[3]"Arabidopsis thaliana chromosome 3 BAC F28J15 genomic sequence."
Lin X., Kaul S., Town C.D., Benito M., Creasy T.H., Haas B.J., Wu D., Maiti R., Ronning C.M., Koo H., Fujii C.Y., Utterback T.R., Barnstead M.E., Bowman C.L., White O., Nierman W.C., Fraser C.M.
Submitted (JAN-2001) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[4]"Arabidopsis thaliana chromosome 3 BAC T2E22 genomic sequence."
Lin X., Kaul S., Town C.D., Benito M., Creasy T.H., Haas B.J., Wu D., Maiti R., Ronning C.M., Koo H., Fujii C.Y., Utterback T.R., Barnstead M.E., Bowman C.L., White O., Nierman W.C., Fraser C.M.
Submitted (JAN-2001) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[5]"Arabidopsis Full Length cDNA Clones."
Yamada K., Liu S.X., Sakano H., Pham P.K., Banh J., Chung M.K., Goldsmith A.D., Lee J.M., Quach H.L., Toriumi M., Yu G., Bowser L., Carninci P., Chen H., Cheuk R., Hayashizaki Y., Ishida J., Jones T. expand/collapse author list , Kamiya A., Karlin-Neumann G., Kawai J., Kim C., Lam B., Lin J., Miranda M., Narusaka M., Nguyen M., Palm C.J., Sakurai T., Satou M., Seki M., Shinn P., Southwick A., Shinozaki K., Davis R.W., Ecker J.R., Theologis A.
Submitted (MAR-2001) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[6]"Arabidopsis Open Reading Frame (ORF) Clones."
Yamada K., Liu S.X., Sakano H., Pham P.K., Banh J., Etgu P., Lee J.M., Toriumi M., Yu G., Brooks S., Chao Q., Chen H., Karlin-Neumann G., Kim C., Lam B., Miranda M., Nguyen M., Palm C.J. expand/collapse author list , Shinn P., Southwick A., Davis R.W., Ecker J.R., Theologis A.
Submitted (AUG-2001) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[7]TAIR
Swarbreck D., Lamesch P., Wilks C., Huala E.
Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[8]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Columbia.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AC069474 Genomic DNA. Translation: AAG51013.1.
AC069472 Genomic DNA. Translation: AAG51066.1.
AF360337 mRNA. Translation: AAK28634.1.
AY051074 mRNA. Translation: AAK93751.1.
CP002686 Genomic DNA. Translation: AEE75183.1.
AP002047 Genomic DNA. Translation: BAB03140.1.
RefSeqNP_566419.1. NM_112067.3.
UniGeneAt.17428.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING3702.AT3G12320.1-P.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT3G12320.1; AT3G12320.1; AT3G12320.
GeneID820411.
KEGGath:AT3G12320.

Organism-specific databases

TAIRAt3g12320.
AT3G12320.

Phylogenomic databases

eggNOGNOG296193.
HOGENOMHOG000131657.
InParanoidQ9LHH5.
OMASNISNFP.
ProtClustDBCLSN2688297.

Gene expression databases

GenevestigatorQ9LHH5.

Family and domain databases

ProtoNetSearch...

Entry information

Entry nameQ9LHH5_ARATH
AccessionPrimary (citable) accession number: Q9LHH5
Entry history
Integrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: October 1, 2000
Last modified: April 16, 2014
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)