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Protein
Submitted name:

Genomic DNA, chromosome 3, P1 clone: MQC3

Gene

T2E22.34

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

  • circadian rhythm Source: TAIR
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Genomic DNA, chromosome 3, P1 clone: MQC3Imported
Submitted name:
Putative uncharacterized protein At3g12320Imported
Submitted name:
Putative uncharacterized protein F28J15.9Imported
Submitted name:
Putative uncharacterized protein T2E22.34Imported
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:T2E22.34Imported
Synonyms:F28J15.9Imported
Ordered Locus Names:At3g12320Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548 Componenti: Chromosome 3

Organism-specific databases

TAIRiAT3G12320.

PTM / Processingi

Proteomic databases

PaxDbiQ9LHH5.
PRIDEiQ9LHH5.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT3G12320.1.

Family & Domainsi

Phylogenomic databases

eggNOGiNOG296193.
HOGENOMiHOG000131657.
InParanoidiQ9LHH5.
OMAiSNISNFP.
PhylomeDBiQ9LHH5.

Sequencei

Sequence statusi: Complete.

Q9LHH5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDCYAEELVV PNYQESSSET YPSTGMWGGW SMSSPEAAEK CFDYDGFNGE
60 70 80 90 100
GMMYSQMSMR TSEEEEESKR SKAFYGASSL HDFEGIEQMD DMFLSSILED
110 120 130 140 150
VPEDDGDVHR ATSSNNSVGS SSMYGGGREV PMFHCHDMSF KEEAPFTISD
160 170 180 190 200
LSEENMLDSN YGDELSSEEF VLQDLQRASQ KLTDETRKCF RDTFYRLARS
210 220 230 240 250
SQDKSDSVSP NSEELLMQTS RYDYGDGNRF SREEEIESET NSIDRAVANL
260
TFNKMESNIS NFPLSERVQ
Length:269
Mass (Da):30,554
Last modified:October 1, 2000 - v1
Checksum:i52F0D62365FEEE34
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC069474 Genomic DNA. Translation: AAG51013.1.
AC069472 Genomic DNA. Translation: AAG51066.1.
AF360337 mRNA. Translation: AAK28634.1.
AY051074 mRNA. Translation: AAK93751.1.
CP002686 Genomic DNA. Translation: AEE75183.1.
AP002047 Genomic DNA. Translation: BAB03140.1.
RefSeqiNP_566419.1. NM_112067.3.
UniGeneiAt.17428.

Genome annotation databases

EnsemblPlantsiAT3G12320.1; AT3G12320.1; AT3G12320.
GeneIDi820411.
KEGGiath:AT3G12320.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC069474 Genomic DNA. Translation: AAG51013.1.
AC069472 Genomic DNA. Translation: AAG51066.1.
AF360337 mRNA. Translation: AAK28634.1.
AY051074 mRNA. Translation: AAK93751.1.
CP002686 Genomic DNA. Translation: AEE75183.1.
AP002047 Genomic DNA. Translation: BAB03140.1.
RefSeqiNP_566419.1. NM_112067.3.
UniGeneiAt.17428.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT3G12320.1.

Proteomic databases

PaxDbiQ9LHH5.
PRIDEiQ9LHH5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G12320.1; AT3G12320.1; AT3G12320.
GeneIDi820411.
KEGGiath:AT3G12320.

Organism-specific databases

TAIRiAT3G12320.

Phylogenomic databases

eggNOGiNOG296193.
HOGENOMiHOG000131657.
InParanoidiQ9LHH5.
OMAiSNISNFP.
PhylomeDBiQ9LHH5.

Family and domain databases

ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC clones."
    Nakamura Y.
    DNA Res. 7:217-221(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. ColumbiaImported.
  2. "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana."
    European Union Chromosome 3 Arabidopsis Sequencing Consortium, Institute for Genomic Research, Kazusa DNA Research Institute
    Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Blocker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F.
    , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schafer M., Muller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Lohnert T.H., Nordsiek G., Reichelt J., Scharfe M., Schon O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwalder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.P., Cottet A., Casacuberta E., Monfort A., Argiriou A., flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.W., Mayer K.F., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    Nature 408:820-822(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. ColumbiaImported.
  3. "Arabidopsis thaliana chromosome 3 BAC F28J15 genomic sequence."
    Lin X., Kaul S., Town C.D., Benito M., Creasy T.H., Haas B.J., Wu D., Maiti R., Ronning C.M., Koo H., Fujii C.Y., Utterback T.R., Barnstead M.E., Bowman C.L., White O., Nierman W.C., Fraser C.M.
    Submitted (JAN-2001) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  4. "Arabidopsis thaliana chromosome 3 BAC T2E22 genomic sequence."
    Lin X., Kaul S., Town C.D., Benito M., Creasy T.H., Haas B.J., Wu D., Maiti R., Ronning C.M., Koo H., Fujii C.Y., Utterback T.R., Barnstead M.E., Bowman C.L., White O., Nierman W.C., Fraser C.M.
    Submitted (JAN-2001) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  5. Cited for: NUCLEOTIDE SEQUENCE.
  6. "Arabidopsis Open Reading Frame (ORF) Clones."
    Yamada K., Liu S.X., Sakano H., Pham P.K., Banh J., Etgu P., Lee J.M., Toriumi M., Yu G., Brooks S., Chao Q., Chen H., Karlin-Neumann G., Kim C., Lam B., Miranda M., Nguyen M., Palm C.J.
    , Shinn P., Southwick A., Davis R.W., Ecker J.R., Theologis A.
    Submitted (AUG-2001) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  7. TAIR
    Swarbreck D., Lamesch P., Wilks C., Huala E.
    Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  8. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. ColumbiaImported.

Entry informationi

Entry nameiQ9LHH5_ARATH
AccessioniPrimary (citable) accession number: Q9LHH5
Entry historyi
Integrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: October 1, 2000
Last modified: June 24, 2015
This is version 82 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.