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Protein

Protein LNK3

Gene

LNK3

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Probable transcriptional coactivator.By similarity

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Activator

Keywords - Biological processi

Transcription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Protein LNK31 Publication
Alternative name(s):
Night light-inducible and clock-regulated 31 Publication
Gene namesi
Name:LNK31 Publication
Ordered Locus Names:At3g12320Imported
ORF Names:F28J15.9Imported, T2E22.34Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

TAIRiAT3G12320.

Pathology & Biotechi

Disruption phenotypei

No effect on circadian clock.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 269269Protein LNK3PRO_0000436033Add
BLAST

PTM databases

iPTMnetiQ9LHH5.

Expressioni

Inductioni

Repressed by members of the TOC1/PRR1 family of clock genes.1 Publication

Interactioni

Subunit structurei

Interacts with REV8.1 Publication

Protein-protein interaction databases

STRINGi3702.AT3G12320.1.

Family & Domainsi

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi63 – 675Poly-GluSequence analysis

Phylogenomic databases

eggNOGiENOG410JGCH. Eukaryota.
ENOG410Z9PA. LUCA.
HOGENOMiHOG000131657.
OMAiMFHCHDM.
PhylomeDBiQ9LHH5.

Sequencei

Sequence statusi: Complete.

Q9LHH5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDCYAEELVV PNYQESSSET YPSTGMWGGW SMSSPEAAEK CFDYDGFNGE
60 70 80 90 100
GMMYSQMSMR TSEEEEESKR SKAFYGASSL HDFEGIEQMD DMFLSSILED
110 120 130 140 150
VPEDDGDVHR ATSSNNSVGS SSMYGGGREV PMFHCHDMSF KEEAPFTISD
160 170 180 190 200
LSEENMLDSN YGDELSSEEF VLQDLQRASQ KLTDETRKCF RDTFYRLARS
210 220 230 240 250
SQDKSDSVSP NSEELLMQTS RYDYGDGNRF SREEEIESET NSIDRAVANL
260
TFNKMESNIS NFPLSERVQ
Length:269
Mass (Da):30,554
Last modified:October 1, 2000 - v1
Checksum:i52F0D62365FEEE34
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP002047 Genomic DNA. Translation: BAB03140.1.
AC069474 Genomic DNA. Translation: AAG51013.1.
AC069472 Genomic DNA. Translation: AAG51066.1.
CP002686 Genomic DNA. Translation: AEE75183.1.
AF360337 mRNA. Translation: AAK28634.1.
AY051074 mRNA. Translation: AAK93751.1.
RefSeqiNP_566419.1. NM_112067.3.
UniGeneiAt.17428.

Genome annotation databases

EnsemblPlantsiAT3G12320.1; AT3G12320.1; AT3G12320.
GeneIDi820411.
GrameneiAT3G12320.1; AT3G12320.1; AT3G12320.
KEGGiath:AT3G12320.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP002047 Genomic DNA. Translation: BAB03140.1.
AC069474 Genomic DNA. Translation: AAG51013.1.
AC069472 Genomic DNA. Translation: AAG51066.1.
CP002686 Genomic DNA. Translation: AEE75183.1.
AF360337 mRNA. Translation: AAK28634.1.
AY051074 mRNA. Translation: AAK93751.1.
RefSeqiNP_566419.1. NM_112067.3.
UniGeneiAt.17428.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT3G12320.1.

PTM databases

iPTMnetiQ9LHH5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G12320.1; AT3G12320.1; AT3G12320.
GeneIDi820411.
GrameneiAT3G12320.1; AT3G12320.1; AT3G12320.
KEGGiath:AT3G12320.

Organism-specific databases

TAIRiAT3G12320.

Phylogenomic databases

eggNOGiENOG410JGCH. Eukaryota.
ENOG410Z9PA. LUCA.
HOGENOMiHOG000131657.
OMAiMFHCHDM.
PhylomeDBiQ9LHH5.

Family and domain databases

ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC clones."
    Kaneko T., Katoh T., Sato S., Nakamura Y., Asamizu E., Tabata S.
    DNA Res. 7:217-221(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana."
    Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F.
    , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    Nature 408:820-822(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  3. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  4. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  5. Cited for: INDUCTION, GENE FAMILY, NOMENCLATURE.
  6. "LNK1 and LNK2 are transcriptional coactivators in the Arabidopsis circadian oscillator."
    Xie Q., Wang P., Liu X., Yuan L., Wang L., Zhang C., Li Y., Xing H., Zhi L., Yue Z., Zhao C., McClung C.R., Xu X.
    Plant Cell 26:2843-2857(2014) [PubMed] [Europe PMC] [Abstract]
    Cited for: DISRUPTION PHENOTYPE.
  7. "Time-dependent sequestration of RVE8 by LNK proteins shapes the diurnal oscillation of anthocyanin biosynthesis."
    Perez-Garcia P., Ma Y., Yanovsky M.J., Mas P.
    Proc. Natl. Acad. Sci. U.S.A. 112:5249-5253(2015) [PubMed] [Europe PMC] [Abstract]
    Cited for: INTERACTION WITH RVE8.

Entry informationi

Entry nameiLNK3_ARATH
AccessioniPrimary (citable) accession number: Q9LHH5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 13, 2016
Last sequence update: October 1, 2000
Last modified: June 8, 2016
This is version 93 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.