ID   Q9LHG0_ARATH            Unreviewed;       293 AA.
AC   Q9LHG0; A0A178VDL4;
DT   01-OCT-2000, integrated into UniProtKB/TrEMBL.
DT   01-OCT-2000, sequence version 1.
DT   27-MAR-2024, entry version 180.
DE   SubName: Full=At3g12480/MQC3.32 {ECO:0000313|EMBL:AAL58929.1};
DE   SubName: Full=Nuclear factor Y, subunit C11 {ECO:0000313|EMBL:AEE75200.1};
GN   Name=NF-YC11 {ECO:0000313|EMBL:AEE75200.1,
GN   ECO:0000313|TAIR:AT3G12480};
GN   Synonyms=nuclear factor Y {ECO:0000313|EMBL:AEE75200.1}, subunit C11
GN   {ECO:0000313|EMBL:AEE75200.1};
GN   OrderedLocusNames=At3g12480 {ECO:0000313|Araport:AT3G12480,
GN   ECO:0000313|EMBL:AEE75200.1};
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702 {ECO:0000313|EMBL:BAB03155.1};
RN   [1] {ECO:0000313|EMBL:BAB03155.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=10907853; DOI=10.1093/dnares/7.3.217;
RA   Nakamura Y.;
RT   "Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence
RT   features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC
RT   clones.";
RL   DNA Res. 7:217-221(2000).
RN   [2] {ECO:0000313|EMBL:AEE75200.1, ECO:0000313|Proteomes:UP000006548}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX   PubMed=11130713; DOI=10.1038/35048706;
RG   European Union Chromosome 3 Arabidopsis Sequencing Consortium;
RG   Institute for Genomic Research;
RG   Kazusa DNA Research Institute;
RA   Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA   Valle G., Blocker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M.,
RA   Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N.,
RA   Artiguenave F., Robert C., Brottier P., Wincker P., Cattolico L.,
RA   Weissenbach J., Saurin W., Quetier F., Schafer M., Muller-Auer S.,
RA   Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N.,
RA   Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P.,
RA   Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S.,
RA   Simionati B., Conrad A., Hornischer K., Kauer G., Lohnert T.H.,
RA   Nordsiek G., Reichelt J., Scharfe M., Schon O., Bargues M., Terol J.,
RA   Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwalder B.,
RA   Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA   de Haan M., Maarse A.C., Alcaraz J.P., Cottet A., Casacuberta E.,
RA   Monfort A., Argiriou A., flores M., Liguori R., Vitale D., Mannhaupt G.,
RA   Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.W., Mayer K.F., Kaul S.,
RA   Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA   Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA   Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA   Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA   Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA   Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA   Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA   Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA   Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT   "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL   Nature 408:820-822(2000).
RN   [3] {ECO:0000313|EMBL:AAL58929.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Cheuk R., Chen H., Kim C.J., Meyers M.C., Banh J., Bowser L., Carninci P.,
RA   Chang E., Dale J.M., Goldsmith A.D., Hayashizaki Y., Ishida J., Jones T.,
RA   Kamiya A., Karlin-Neumann G., Kawai J., Lam B., Lee J.M., Lin J.,
RA   Miranda M., Narusaka M., Nguyen M., Onodera C.S., Palm C.J., Quach H.L.,
RA   Sakurai T., Satou M., Seki M., Southwick A., Tang C.C., Toriumi M.,
RA   Wu H.C., Yamada K., Yamamura Y., Yu G., Yu S., Shinozaki K., Davis R.W.,
RA   Theologis A., Ecker J.R.;
RT   "Arabidopsis cDNA clones.";
RL   Submitted (DEC-2001) to the EMBL/GenBank/DDBJ databases.
RN   [4] {ECO:0000313|EMBL:AAN28786.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Cheuk R., Chen H., Kim C.J., Shinn P., Bowser L., Carninci P., Chan M.M.,
RA   Chang C.H., Dale J.M., Deng J.M., Hayashizaki Y., Hsuan V.W., Ishida J.,
RA   Jones T., Kamiya A., Karlin-Neumann G., Kawai J., Lam B., Lee J.M., Lin J.,
RA   Miranda M., Narusaka M., Nguyen M., Palm C.J., Quach H.L., Sakurai T.,
RA   Satou M., Seki M., Southwick A., Tang C.C., Toriumi M., Wallender E.K.,
RA   Wong C., Wu H.C., Yamada K., Yu G., Yuan S., Shinozaki K., Davis R.W.,
RA   Theologis A., Ecker J.R.;
RT   "Arabidopsis ORF clones.";
RL   Submitted (AUG-2002) to the EMBL/GenBank/DDBJ databases.
RN   [5] {ECO:0007829|PubMed:19376835}
RP   IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RX   PubMed=19376835; DOI=10.1104/pp.109.138677;
RA   Reiland S., Messerli G., Baerenfaller K., Gerrits B., Endler A.,
RA   Grossmann J., Gruissem W., Baginsky S.;
RT   "Large-scale Arabidopsis phosphoproteome profiling reveals novel
RT   chloroplast kinase substrates and phosphorylation networks.";
RL   Plant Physiol. 150:889-903(2009).
RN   [6] {ECO:0000313|EMBL:AEE75200.1}
RP   NUCLEOTIDE SEQUENCE.
RG   TAIR;
RA   Swarbreck D., Lamesch P., Wilks C., Huala E.;
RL   Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases.
RN   [7] {ECO:0000313|EMBL:AEE75200.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Krishnakumar V., Cheng C.-Y., Chan A.P., Schobel S., Kim M., Ferlanti E.S.,
RA   Belyaeva I., Rosen B.D., Micklem G., Miller J.R., Vaughn M., Town C.D.;
RL   Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
RN   [8] {ECO:0000313|Proteomes:UP000006548}
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
CC   -!- INTERACTION:
CC       Q9LHG0; P49592: DR1; NbExp=3; IntAct=EBI-4452389, EBI-15193559;
CC       Q9LHG0; Q944I5: NF-YB12; NbExp=3; IntAct=EBI-4452389, EBI-15192513;
CC       Q9LHG0; O23310: NFYB3; NbExp=5; IntAct=EBI-4452389, EBI-4452064;
CC       Q9LHG0; Q9SIT9: NFYB7; NbExp=4; IntAct=EBI-4452389, EBI-4459822;
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR   EMBL; AF462841; AAL58929.1; -; mRNA.
DR   EMBL; AY143847; AAN28786.1; -; mRNA.
DR   EMBL; CP002686; AEE75200.1; -; Genomic_DNA.
DR   EMBL; AP002047; BAB03155.1; -; Genomic_DNA.
DR   RefSeq; NP_187854.2; NM_112083.4.
DR   AlphaFoldDB; Q9LHG0; -.
DR   SMR; Q9LHG0; -.
DR   IntAct; Q9LHG0; 7.
DR   STRING; 3702.Q9LHG0; -.
DR   MetOSite; Q9LHG0; -.
DR   PaxDb; 3702-AT3G12480-1; -.
DR   ProteomicsDB; 185712; -.
DR   EnsemblPlants; AT3G12480.1; AT3G12480.1; AT3G12480.
DR   GeneID; 820427; -.
DR   Gramene; AT3G12480.1; AT3G12480.1; AT3G12480.
DR   KEGG; ath:AT3G12480; -.
DR   Araport; AT3G12480; -.
DR   TAIR; AT3G12480; NF-YC11.
DR   eggNOG; KOG1659; Eukaryota.
DR   HOGENOM; CLU_092974_0_0_1; -.
DR   OMA; NSEYPGW; -.
DR   OrthoDB; 940566at2759; -.
DR   PRO; PR:Q9LHG0; -.
DR   Proteomes; UP000006548; Chromosome 3.
DR   ExpressionAtlas; Q9LHG0; baseline and differential.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR   GO; GO:0046982; F:protein heterodimerization activity; IEA:InterPro.
DR   GO; GO:0000976; F:transcription cis-regulatory region binding; IPI:TAIR.
DR   Gene3D; 1.10.20.10; Histone, subunit A; 1.
DR   InterPro; IPR003958; CBFA_NFYB_domain.
DR   InterPro; IPR009072; Histone-fold.
DR   PANTHER; PTHR10252; HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED; 1.
DR   PANTHER; PTHR10252:SF138; TRANSCRIPTION FACTOR CBF_NF-Y_ARCHAEAL HISTONE DOMAIN-CONTAINING PROTEIN; 1.
DR   Pfam; PF00808; CBFD_NFYB_HMF; 1.
DR   SUPFAM; SSF47113; Histone-fold; 1.
PE   1: Evidence at protein level;
KW   Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW   Proteomics identification {ECO:0007829|PeptideAtlas:Q9LHG0,
KW   ECO:0007829|ProteomicsDB:Q9LHG0};
KW   Reference proteome {ECO:0000313|Proteomes:UP000006548}.
FT   DOMAIN          8..71
FT                   /note="Transcription factor CBF/NF-Y/archaeal histone"
FT                   /evidence="ECO:0000259|Pfam:PF00808"
FT   REGION          89..266
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        103..132
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        155..170
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        190..207
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        239..257
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   293 AA;  32292 MW;  29C4A9A775BB43F3 CRC64;
     MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT YEITLERGAK
     TVSSLHLKHC VERYNVFDFL REVVSKVPDY GHSQGQGHGD VTMDDRSISK RRKPISDEVN
     DSDEEYKKSK TQEIGSAKTS GRGGRGRGRG RGRGGRAAKA AEREGLNREM EVEAANSGQP
     PPEDNVKMHA SESSPQEDEK KGIDGTAASN EDTKQHLQSP KEGIDFDLNA ESLDLNETKL
     APATGTTTTT TAATDSEEYS GWPMMDISKM DPAQLASLGK RIDEDEEDYD EEG
//