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Protein

60S acidic ribosomal protein P2-3

Gene

RPP2C

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Plays an important role in the elongation step of protein synthesis.By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiREACT_283587. Eukaryotic Translation Termination.
REACT_284557. Peptide chain elongation.
REACT_300607. SRP-dependent cotranslational protein targeting to membrane.
REACT_301375. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_304489. GTP hydrolysis and joining of the 60S ribosomal subunit.
REACT_310661. L13a-mediated translational silencing of Ceruloplasmin expression.
REACT_312375. Formation of a pool of free 40S subunits.
REACT_319752. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S acidic ribosomal protein P2-3
Gene namesi
Name:RPP2C
Ordered Locus Names:At3g28500
ORF Names:T20D4.1
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548 Componenti: Chromosome 3

Organism-specific databases

TAIRiAT3G28500.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: TAIR
  • cytosolic ribosome Source: TAIR
  • plasma membrane Source: TAIR
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 11511560S acidic ribosomal protein P2-3PRO_0000245776Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei104 – 1041Phosphoserine1 Publication
Modified residuei105 – 1051Phosphoserine1 Publication

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDbiQ9LH85.
PRIDEiQ9LH85.

Interactioni

Subunit structurei

P1 and P2 exist as dimers at the large ribosomal subunit.

Protein-protein interaction databases

STRINGi3702.AT3G28500.1.

Structurei

3D structure databases

ProteinModelPortaliQ9LH85.
SMRiQ9LH85. Positions 1-69.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L12P family.Curated

Phylogenomic databases

eggNOGiNOG243719.
HOGENOMiHOG000229897.
InParanoidiQ9LH85.
KOiK02943.
OMAiAEIDETK.
PhylomeDBiQ9LH85.

Family and domain databases

HAMAPiMF_01478. Ribosomal_L12_arch.
InterProiIPR027534. Ribosomal_L12.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9LH85-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKVIAAFLLA KLGGNENPTS NDLKKILESV GAEIDETKID LLFSLIKDHD
60 70 80 90 100
VTELIAAGRE KMSALSSGGP AVAMVAGGGG GGAASAAEPV AESKKKVEEV
110
KDESSDDAGM MGLFD
Length:115
Mass (Da):11,735
Last modified:October 1, 2000 - v1
Checksum:i90F28CD3F28AE81A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP002059 Genomic DNA. Translation: BAB01952.1.
CP002686 Genomic DNA. Translation: AEE77453.1.
BT003971 mRNA. Translation: AAO42015.1.
BT005087 mRNA. Translation: AAO50620.1.
AY086773 mRNA. Translation: AAM63824.1.
RefSeqiNP_189491.1. NM_113770.2.
UniGeneiAt.6781.

Genome annotation databases

EnsemblPlantsiAT3G28500.1; AT3G28500.1; AT3G28500.
GeneIDi822480.
KEGGiath:AT3G28500.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP002059 Genomic DNA. Translation: BAB01952.1.
CP002686 Genomic DNA. Translation: AEE77453.1.
BT003971 mRNA. Translation: AAO42015.1.
BT005087 mRNA. Translation: AAO50620.1.
AY086773 mRNA. Translation: AAM63824.1.
RefSeqiNP_189491.1. NM_113770.2.
UniGeneiAt.6781.

3D structure databases

ProteinModelPortaliQ9LH85.
SMRiQ9LH85. Positions 1-69.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT3G28500.1.

Proteomic databases

PaxDbiQ9LH85.
PRIDEiQ9LH85.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G28500.1; AT3G28500.1; AT3G28500.
GeneIDi822480.
KEGGiath:AT3G28500.

Organism-specific databases

TAIRiAT3G28500.

Phylogenomic databases

eggNOGiNOG243719.
HOGENOMiHOG000229897.
InParanoidiQ9LH85.
KOiK02943.
OMAiAEIDETK.
PhylomeDBiQ9LH85.

Enzyme and pathway databases

ReactomeiREACT_283587. Eukaryotic Translation Termination.
REACT_284557. Peptide chain elongation.
REACT_300607. SRP-dependent cotranslational protein targeting to membrane.
REACT_301375. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_304489. GTP hydrolysis and joining of the 60S ribosomal subunit.
REACT_310661. L13a-mediated translational silencing of Ceruloplasmin expression.
REACT_312375. Formation of a pool of free 40S subunits.
REACT_319752. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiQ9LH85.

Family and domain databases

HAMAPiMF_01478. Ribosomal_L12_arch.
InterProiIPR027534. Ribosomal_L12.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC clones."
    Kaneko T., Katoh T., Sato S., Nakamura Y., Asamizu E., Tabata S.
    DNA Res. 7:217-221(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  4. "Full-length cDNA from Arabidopsis thaliana."
    Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A.
    Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
  5. "The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome."
    Barakat A., Szick-Miranda K., Chang I.-F., Guyot R., Blanc G., Cooke R., Delseny M., Bailey-Serres J.
    Plant Physiol. 127:398-415(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY ORGANIZATION, NOMENCLATURE.
  6. Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-104 AND SER-105, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Root.

Entry informationi

Entry nameiRLA23_ARATH
AccessioniPrimary (citable) accession number: Q9LH85
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 11, 2006
Last sequence update: October 1, 2000
Last modified: June 24, 2015
This is version 83 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.