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Q9LH85

- RLA23_ARATH

UniProt

Q9LH85 - RLA23_ARATH

Protein

60S acidic ribosomal protein P2-3

Gene

RPP2C

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli
  1. Functioni

    Plays an important role in the elongation step of protein synthesis.By similarity

    GO - Molecular functioni

    1. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translational elongation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    60S acidic ribosomal protein P2-3
    Gene namesi
    Name:RPP2C
    Ordered Locus Names:At3g28500
    ORF Names:T20D4.1
    OrganismiArabidopsis thaliana (Mouse-ear cress)
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Chromosome 3

    Organism-specific databases

    TAIRiAT3G28500.

    Subcellular locationi

    GO - Cellular componenti

    1. cytosol Source: TAIR
    2. cytosolic ribosome Source: TAIR
    3. plasma membrane Source: TAIR

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 11511560S acidic ribosomal protein P2-3PRO_0000245776Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Modified residuei104 – 1041Phosphoserine1 Publication
    Modified residuei105 – 1051Phosphoserine1 Publication

    Keywords - PTMi

    Phosphoprotein

    Proteomic databases

    PaxDbiQ9LH85.
    PRIDEiQ9LH85.

    Expressioni

    Gene expression databases

    GenevestigatoriQ9LH85.

    Interactioni

    Subunit structurei

    P1 and P2 exist as dimers at the large ribosomal subunit.

    Protein-protein interaction databases

    STRINGi3702.AT3G28500.1-P.

    Structurei

    3D structure databases

    ProteinModelPortaliQ9LH85.
    SMRiQ9LH85. Positions 1-59.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L12P family.Curated

    Phylogenomic databases

    eggNOGiNOG243719.
    HOGENOMiHOG000229897.
    InParanoidiQ9LH85.
    KOiK02943.
    OMAiAEIDETK.
    PhylomeDBiQ9LH85.

    Family and domain databases

    HAMAPiMF_01478. Ribosomal_L12_arch.
    InterProiIPR001813. Ribosomal_L10/L12.
    IPR027534. Ribosomal_L12.
    [Graphical view]
    PfamiPF00428. Ribosomal_60s. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q9LH85-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKVIAAFLLA KLGGNENPTS NDLKKILESV GAEIDETKID LLFSLIKDHD    50
    VTELIAAGRE KMSALSSGGP AVAMVAGGGG GGAASAAEPV AESKKKVEEV 100
    KDESSDDAGM MGLFD 115
    Length:115
    Mass (Da):11,735
    Last modified:October 1, 2000 - v1
    Checksum:i90F28CD3F28AE81A
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP002059 Genomic DNA. Translation: BAB01952.1.
    CP002686 Genomic DNA. Translation: AEE77453.1.
    BT003971 mRNA. Translation: AAO42015.1.
    BT005087 mRNA. Translation: AAO50620.1.
    AY086773 mRNA. Translation: AAM63824.1.
    RefSeqiNP_189491.1. NM_113770.2.
    UniGeneiAt.6781.

    Genome annotation databases

    EnsemblPlantsiAT3G28500.1; AT3G28500.1; AT3G28500.
    GeneIDi822480.
    KEGGiath:AT3G28500.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP002059 Genomic DNA. Translation: BAB01952.1 .
    CP002686 Genomic DNA. Translation: AEE77453.1 .
    BT003971 mRNA. Translation: AAO42015.1 .
    BT005087 mRNA. Translation: AAO50620.1 .
    AY086773 mRNA. Translation: AAM63824.1 .
    RefSeqi NP_189491.1. NM_113770.2.
    UniGenei At.6781.

    3D structure databases

    ProteinModelPortali Q9LH85.
    SMRi Q9LH85. Positions 1-59.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 3702.AT3G28500.1-P.

    Proteomic databases

    PaxDbi Q9LH85.
    PRIDEi Q9LH85.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi AT3G28500.1 ; AT3G28500.1 ; AT3G28500 .
    GeneIDi 822480.
    KEGGi ath:AT3G28500.

    Organism-specific databases

    TAIRi AT3G28500.

    Phylogenomic databases

    eggNOGi NOG243719.
    HOGENOMi HOG000229897.
    InParanoidi Q9LH85.
    KOi K02943.
    OMAi AEIDETK.
    PhylomeDBi Q9LH85.

    Gene expression databases

    Genevestigatori Q9LH85.

    Family and domain databases

    HAMAPi MF_01478. Ribosomal_L12_arch.
    InterProi IPR001813. Ribosomal_L10/L12.
    IPR027534. Ribosomal_L12.
    [Graphical view ]
    Pfami PF00428. Ribosomal_60s. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC clones."
      Kaneko T., Katoh T., Sato S., Nakamura Y., Asamizu E., Tabata S.
      DNA Res. 7:217-221(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Columbia.
    2. The Arabidopsis Information Resource (TAIR)
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: GENOME REANNOTATION.
      Strain: cv. Columbia.
    3. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
      Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
      , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
      Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Columbia.
    4. "Full-length cDNA from Arabidopsis thaliana."
      Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A.
      Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    5. "The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome."
      Barakat A., Szick-Miranda K., Chang I.-F., Guyot R., Blanc G., Cooke R., Delseny M., Bailey-Serres J.
      Plant Physiol. 127:398-415(2001) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENE FAMILY ORGANIZATION, NOMENCLATURE.
    6. Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-104 AND SER-105, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
      Tissue: Root.

    Entry informationi

    Entry nameiRLA23_ARATH
    AccessioniPrimary (citable) accession number: Q9LH85
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 11, 2006
    Last sequence update: October 1, 2000
    Last modified: October 1, 2014
    This is version 77 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Arabidopsis thaliana
      Arabidopsis thaliana: entries and gene names
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3