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Q9LH85

- RLA23_ARATH

UniProt

Q9LH85 - RLA23_ARATH

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Protein
60S acidic ribosomal protein P2-3
Gene
RPP2C, At3g28500, T20D4.1
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at protein leveli

Functioni

Plays an important role in the elongation step of protein synthesis By similarity.UniRule annotation

GO - Molecular functioni

  1. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translational elongation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
60S acidic ribosomal protein P2-3
Gene namesi
Name:RPP2C
Ordered Locus Names:At3g28500
ORF Names:T20D4.1
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548: Chromosome 3

Organism-specific databases

TAIRiAT3G28500.

Subcellular locationi

GO - Cellular componenti

  1. cytosol Source: TAIR
  2. cytosolic ribosome Source: TAIR
  3. plasma membrane Source: TAIR
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 11511560S acidic ribosomal protein P2-3UniRule annotation
PRO_0000245776Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei104 – 1041Phosphoserine1 Publication
Modified residuei105 – 1051Phosphoserine1 Publication

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDbiQ9LH85.
PRIDEiQ9LH85.

Expressioni

Gene expression databases

GenevestigatoriQ9LH85.

Interactioni

Subunit structurei

P1 and P2 exist as dimers at the large ribosomal subunit.

Protein-protein interaction databases

STRINGi3702.AT3G28500.1-P.

Structurei

3D structure databases

ProteinModelPortaliQ9LH85.
SMRiQ9LH85. Positions 1-59.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiNOG243719.
HOGENOMiHOG000229897.
InParanoidiQ9LH85.
KOiK02943.
OMAiAEIDETK.
PhylomeDBiQ9LH85.

Family and domain databases

HAMAPiMF_01478. Ribosomal_L12_arch.
InterProiIPR001813. Ribosomal_L10/L12.
IPR027534. Ribosomal_L12.
[Graphical view]
PfamiPF00428. Ribosomal_60s. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9LH85-1 [UniParc]FASTAAdd to Basket

« Hide

MKVIAAFLLA KLGGNENPTS NDLKKILESV GAEIDETKID LLFSLIKDHD    50
VTELIAAGRE KMSALSSGGP AVAMVAGGGG GGAASAAEPV AESKKKVEEV 100
KDESSDDAGM MGLFD 115
Length:115
Mass (Da):11,735
Last modified:October 1, 2000 - v1
Checksum:i90F28CD3F28AE81A
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP002059 Genomic DNA. Translation: BAB01952.1.
CP002686 Genomic DNA. Translation: AEE77453.1.
BT003971 mRNA. Translation: AAO42015.1.
BT005087 mRNA. Translation: AAO50620.1.
AY086773 mRNA. Translation: AAM63824.1.
RefSeqiNP_189491.1. NM_113770.2.
UniGeneiAt.6781.

Genome annotation databases

EnsemblPlantsiAT3G28500.1; AT3G28500.1; AT3G28500.
GeneIDi822480.
KEGGiath:AT3G28500.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP002059 Genomic DNA. Translation: BAB01952.1 .
CP002686 Genomic DNA. Translation: AEE77453.1 .
BT003971 mRNA. Translation: AAO42015.1 .
BT005087 mRNA. Translation: AAO50620.1 .
AY086773 mRNA. Translation: AAM63824.1 .
RefSeqi NP_189491.1. NM_113770.2.
UniGenei At.6781.

3D structure databases

ProteinModelPortali Q9LH85.
SMRi Q9LH85. Positions 1-59.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 3702.AT3G28500.1-P.

Proteomic databases

PaxDbi Q9LH85.
PRIDEi Q9LH85.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi AT3G28500.1 ; AT3G28500.1 ; AT3G28500 .
GeneIDi 822480.
KEGGi ath:AT3G28500.

Organism-specific databases

TAIRi AT3G28500.

Phylogenomic databases

eggNOGi NOG243719.
HOGENOMi HOG000229897.
InParanoidi Q9LH85.
KOi K02943.
OMAi AEIDETK.
PhylomeDBi Q9LH85.

Gene expression databases

Genevestigatori Q9LH85.

Family and domain databases

HAMAPi MF_01478. Ribosomal_L12_arch.
InterProi IPR001813. Ribosomal_L10/L12.
IPR027534. Ribosomal_L12.
[Graphical view ]
Pfami PF00428. Ribosomal_60s. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC clones."
    Kaneko T., Katoh T., Sato S., Nakamura Y., Asamizu E., Tabata S.
    DNA Res. 7:217-221(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  4. "Full-length cDNA from Arabidopsis thaliana."
    Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A.
    Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
  5. "The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome."
    Barakat A., Szick-Miranda K., Chang I.-F., Guyot R., Blanc G., Cooke R., Delseny M., Bailey-Serres J.
    Plant Physiol. 127:398-415(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY ORGANIZATION, NOMENCLATURE.
  6. Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-104 AND SER-105, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Root.

Entry informationi

Entry nameiRLA23_ARATH
AccessioniPrimary (citable) accession number: Q9LH85
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 11, 2006
Last sequence update: October 1, 2000
Last modified: June 11, 2014
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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