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Protein

60S acidic ribosomal protein P2-3

Gene

RPP2C

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Plays an important role in the elongation step of protein synthesis.By similarity

GO - Molecular functioni

  • structural constituent of ribosome Source: CAFA

GO - Biological processi

  • cytoplasmic translation Source: GO_Central
  • mature ribosome assembly Source: CAFA
  • ribosome assembly Source: CAFA
  • translational elongation Source: InterPro

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S acidic ribosomal protein P2-3
Gene namesi
Name:RPP2C
Ordered Locus Names:At3g28500
ORF Names:T20D4.1
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G28500.
TAIRilocus:2098653. AT3G28500.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: TAIR
  • cytosolic large ribosomal subunit Source: GO_Central
  • cytosolic ribosome Source: TAIR
  • plasma membrane Source: TAIR
  • polysomal ribosome Source: CAFA

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002457761 – 11560S acidic ribosomal protein P2-3Add BLAST115

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei104PhosphoserineCombined sources1
Modified residuei105PhosphoserineCombined sources1

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDbiQ9LH85.
PRIDEiQ9LH85.

PTM databases

iPTMnetiQ9LH85.

Expressioni

Gene expression databases

GenevisibleiQ9LH85. AT.

Interactioni

Subunit structurei

P1 and P2 exist as dimers at the large ribosomal subunit.

Protein-protein interaction databases

BioGridi7809. 1 interactor.
STRINGi3702.AT3G28500.1.

Structurei

3D structure databases

ProteinModelPortaliQ9LH85.
SMRiQ9LH85.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3449. Eukaryota.
COG2058. LUCA.
HOGENOMiHOG000229897.
InParanoidiQ9LH85.
KOiK02943.
OMAiGGNENPT.
OrthoDBiEOG09361069.
PhylomeDBiQ9LH85.

Family and domain databases

HAMAPiMF_01478. Ribosomal_L12_arch. 1 hit.
InterProiView protein in InterPro
IPR027534. Ribosomal_L12.

Sequencei

Sequence statusi: Complete.

Q9LH85-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKVIAAFLLA KLGGNENPTS NDLKKILESV GAEIDETKID LLFSLIKDHD
60 70 80 90 100
VTELIAAGRE KMSALSSGGP AVAMVAGGGG GGAASAAEPV AESKKKVEEV
110
KDESSDDAGM MGLFD
Length:115
Mass (Da):11,735
Last modified:October 1, 2000 - v1
Checksum:i90F28CD3F28AE81A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP002059 Genomic DNA. Translation: BAB01952.1.
CP002686 Genomic DNA. Translation: AEE77453.1.
BT003971 mRNA. Translation: AAO42015.1.
BT005087 mRNA. Translation: AAO50620.1.
AY086773 mRNA. Translation: AAM63824.1.
RefSeqiNP_189491.1. NM_113770.3.
UniGeneiAt.6781.

Genome annotation databases

EnsemblPlantsiAT3G28500.1; AT3G28500.1; AT3G28500.
GeneIDi822480.
GrameneiAT3G28500.1; AT3G28500.1; AT3G28500.
KEGGiath:AT3G28500.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRLA23_ARATH
AccessioniPrimary (citable) accession number: Q9LH85
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 11, 2006
Last sequence update: October 1, 2000
Last modified: June 7, 2017
This is version 99 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families