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Protein

Pentatricopeptide repeat-containing protein At1g55890, mitochondrial

Gene

At1g55890

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At1g55890, mitochondrial
Gene namesi
Ordered Locus Names:At1g55890
ORF Names:F14J16.14
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G55890.
TAIRilocus:2012120. AT1G55890.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 19MitochondrionSequence analysisAdd BLAST19
ChainiPRO_000034282320 – 398Pentatricopeptide repeat-containing protein At1g55890, mitochondrialAdd BLAST379

Proteomic databases

PaxDbiQ9LG23.
PRIDEiQ9LG23.

PTM databases

iPTMnetiQ9LG23.
SwissPalmiQ9LG23.

Expressioni

Gene expression databases

GenevisibleiQ9LG23. AT.

Interactioni

Protein-protein interaction databases

BioGridi27264. 5 interactors.
IntActiQ9LG23. 5 interactors.
STRINGi3702.AT1G55890.1.

Structurei

3D structure databases

ProteinModelPortaliQ9LG23.
SMRiQ9LG23.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati108 – 142PPR 1Add BLAST35
Repeati143 – 173PPR 2Add BLAST31
Repeati179 – 213PPR 3Add BLAST35
Repeati214 – 248PPR 4Add BLAST35
Repeati249 – 283PPR 5Add BLAST35
Repeati284 – 318PPR 6Add BLAST35
Repeati319 – 353PPR 7Add BLAST35

Sequence similaritiesi

Belongs to the PPR family. P subfamily.Curated

Keywords - Domaini

Repeat, Transit peptide

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000090560.
OMAiPERNCKQ.
OrthoDBiEOG09360DQL.
PhylomeDBiQ9LG23.

Family and domain databases

InterProiView protein in InterPro
IPR002885. Pentatricopeptide_repeat.
PfamiView protein in Pfam
PF01535. PPR. 2 hits.
PF13041. PPR_2. 2 hits.
TIGRFAMsiTIGR00756. PPR. 4 hits.
PROSITEiView protein in PROSITE
PS51375. PPR. 7 hits.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9LG23-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSLSRVLRG TFNTCPIRRF SSAATVVSEP TAVTAAISPP QKSLTSLVNG
60 70 80 90 100
ERNPKRIVEK FKKACESERF RTNIAVYDRT VRRLVAAKRL HYVEEILEEQ
110 120 130 140 150
KKYRDMSKEG FAARIISLYG KAGMFENAQK VFEEMPNRDC KRSVLSFNAL
160 170 180 190 200
LSAYRLSKKF DVVEELFNEL PGKLSIKPDI VSYNTLIKAL CEKDSLPEAV
210 220 230 240 250
ALLDEIENKG LKPDIVTFNT LLLSSYLKGQ FELGEEIWAK MVEKNVAIDI
260 270 280 290 300
RTYNARLLGL ANEAKSKELV NLFGELKASG LKPDVFSFNA MIRGSINEGK
310 320 330 340 350
MDEAEAWYKE IVKHGYRPDK ATFALLLPAM CKAGDFESAI ELFKETFSKR
360 370 380 390
YLVGQTTLQQ LVDELVKGSK REEAEEIVKI AKTNDFLKLK LNLPSQEE
Length:398
Mass (Da):44,994
Last modified:October 1, 2000 - v1
Checksum:i6FCEEDFF465D84DA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002304 Genomic DNA. Translation: AAF79315.1.
CP002684 Genomic DNA. Translation: AEE33315.1.
AY074876 mRNA. Translation: AAL75896.1.
BT015869 mRNA. Translation: AAU94432.1.
PIRiB96600.
RefSeqiNP_175985.1. NM_104466.4.
UniGeneiAt.21348.

Genome annotation databases

EnsemblPlantsiAT1G55890.1; AT1G55890.1; AT1G55890.
GeneIDi842039.
GrameneiAT1G55890.1; AT1G55890.1; AT1G55890.
KEGGiath:AT1G55890.

Similar proteinsi

Entry informationi

Entry nameiPPR82_ARATH
AccessioniPrimary (citable) accession number: Q9LG23
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 1, 2008
Last sequence update: October 1, 2000
Last modified: June 7, 2017
This is version 87 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families