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Protein

Probable glycosyltransferase At5g11130

Gene

At5g11130/At5g11120

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

May be involved in cell wall biosynthesis.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionGlycosyltransferase, Transferase
Biological processCell wall biogenesis/degradation

Enzyme and pathway databases

BioCyciARA:AT5G11130-MONOMER.

Protein family/group databases

CAZyiGT47. Glycosyltransferase Family 47.

Names & Taxonomyi

Protein namesi
Recommended name:
Probable glycosyltransferase At5g11130 (EC:2.4.-.-)
Gene namesi
Ordered Locus Names:At5g11130/At5g11120
ORF Names:F2I11.10, F2I11.20, T5K6.3
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

AraportiAT5G11130.
TAIRilocus:2147927. AT5G11130.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 4CytoplasmicSequence analysis4
Transmembranei5 – 25Helical; Signal-anchor for type II membrane proteinSequence analysisAdd BLAST21
Topological domaini26 – 480LumenalSequence analysisAdd BLAST455

Keywords - Cellular componenti

Golgi apparatus, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003922951 – 480Probable glycosyltransferase At5g11130Add BLAST480

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Glycosylationi68N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi74N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi119N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi128N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi243N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi281N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi356N-linked (GlcNAc...) asparagineSequence analysis1

Keywords - PTMi

Glycoprotein

Proteomic databases

PaxDbiQ9LFP3.

Expressioni

Gene expression databases

ExpressionAtlasiQ9LFP3. baseline.
GenevisibleiQ9LFP3. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT5G11130.1.

Structurei

3D structure databases

ProteinModelPortaliQ9LFP3.
SMRiQ9LFP3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi62 – 65Poly-Ser4
Compositional biasi79 – 82Poly-Val4

Sequence similaritiesi

Belongs to the glycosyltransferase 47 family.Curated

Keywords - Domaini

Signal-anchor, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG1021. Eukaryota.
ENOG410XTFH. LUCA.
HOGENOMiHOG000238847.
InParanoidiQ9LFP3.
OMAiHMVMHSV.
OrthoDBiEOG093609C4.
PhylomeDBiQ9LFP3.

Family and domain databases

InterProiView protein in InterPro
IPR004263. Exostosin.
PfamiView protein in Pfam
PF03016. Exostosin. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9LFP3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MADLTCTTPF LLYPSLVIIL FFYSINHHNQ IFSSVVDDDP SCRLSSSPQA
60 70 80 90 100
VFSSFRIFPF RSSSSCLNIT SNNNSTSEVV VVEEVDEAVE RIEEGLAMAR
110 120 130 140 150
AAIRKAGEKN LRRDRDRTNN SDVGVVSNGS VYLNAFTFHQ SHKEMEKRFK
160 170 180 190 200
IWTYREGEAP LFHKGPLNNI YAIEGQFMDE IENGNSRFKA ASPEEATVFY
210 220 230 240 250
IPVGIVNIIR FVYRPYTSYA RDRLQNIVKD YISLISNRYP YWNRSRGADH
260 270 280 290 300
FFLSCHDWAP DVSAVDPELY KHFIRALCNA NSSEGFTPMR DVSLPEINIP
310 320 330 340 350
HSQLGFVHTG EPPQNRKLLA FFAGGSHGDV RKILFQHWKE KDKDVLVYEN
360 370 380 390 400
LPKTMNYTKM MDKAKFCLCP SGWEVASPRI VESLYSGCVP VIIADYYVLP
410 420 430 440 450
FSDVLNWKTF SVHIPISKMP DIKKILEAIT EEEYLNMQRR VLEVRKHFVI
460 470 480
NRPSKPYDML HMIMHSIWLR RLNVRIPLSQ
Length:480
Mass (Da):55,363
Last modified:March 23, 2010 - v2
Checksum:iF36A2AEF32C55766
GO

Sequence cautioni

The sequence CAB96647 differs from that shown. Reason: Erroneous gene model prediction. Was originally thought to correspond to two different genes At5g11120 and At5g11130.Curated
The sequence CAB96648 differs from that shown. Reason: Erroneous gene model prediction. Was originally thought to correspond to two different genes At5g11120 and At5g11130.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL360314 Genomic DNA. Translation: CAB96647.1. Sequence problems.
AL360314 Genomic DNA. Translation: CAB96648.1. Sequence problems.
CP002688 Genomic DNA. Translation: AED91637.1.
RefSeqiNP_001331253.1. NM_001343157.1.
NP_196674.2. NM_121151.3.

Genome annotation databases

EnsemblPlantsiAT5G11130.1; AT5G11130.1; AT5G11130.
GeneIDi830981.
GrameneiAT5G11130.1; AT5G11130.1; AT5G11130.
KEGGiath:AT5G11130.

Similar proteinsi

Entry informationi

Entry nameiGLYT4_ARATH
AccessioniPrimary (citable) accession number: Q9LFP3
Secondary accession number(s): Q9LFP4
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 23, 2010
Last sequence update: March 23, 2010
Last modified: October 25, 2017
This is version 83 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families