Probable glycosyltransferase At5g11130 - Arabidopsis thaliana (Mouse-ear cress)

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Q9LFP3 (GLYT4_ARATH) Reviewed, UniProtKB/Swiss-Prot

Last modified December 14, 2011. Version 48. History...

Clusters with 100%, 90%, 50% identity |

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Third-party data

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents Customize order

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents Customize order

Names and origin

Protein names

Recommended name:
Probable glycosyltransferase At5g11130
EC=2.4.-.-

Gene names

Ordered Locus Names:	At5g11120/At5g11130
ORF Names:	F2I11.10, F2I11.20, T5K6.3

Organism

Arabidopsis thaliana (Mouse-ear cress)

Taxonomic identifier

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length	480 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	May be involved in cell wall biosynthesis.
Subcellular location	Golgi apparatus membrane; Single-pass type II membrane protein By similarity.
Sequence similarities	Belongs to the glycosyltransferase 47 family.
Sequence caution	The sequence CAB96647.1 differs from that shown. Reason: Erroneous gene model prediction. Was originally thought to correspond to two different genes At5g11120 and At5g11130. The sequence CAB96648.1 differs from that shown. Reason: Erroneous gene model prediction. Was originally thought to correspond to two different genes At5g11120 and At5g11130.

Ontologies

Keywords
Biological process	Cell wall biogenesis/degradation
Cellular component	Golgi apparatus Membrane
Domain	Signal-anchor Transmembrane Transmembrane helix
Molecular function	Glycosyltransferase Transferase
PTM	Glycoprotein
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	cellular cell wall organization Inferred from electronic annotation. Source: UniProtKB-KW
Cellular component	Golgi membrane Inferred from electronic annotation. Source: UniProtKB-SubCell integral to membrane Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	transferase activity, transferring glycosyl groups Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

480

Probable glycosyltransferase At5g11130

PRO_0000392295

Regions

Topological domain

4

Cytoplasmic Potential

Transmembrane

21

Helical; Signal-anchor for type II membrane protein; Potential

Topological domain

455

Lumenal Potential

Compositional bias

4

Poly-Ser

Compositional bias

4

Poly-Val

Amino acid modifications

Glycosylation

1

N-linked (GlcNAc...) Potential

Glycosylation

1

N-linked (GlcNAc...) Potential

Glycosylation

1

N-linked (GlcNAc...) Potential

Glycosylation

1

N-linked (GlcNAc...) Potential

Glycosylation

1

N-linked (GlcNAc...) Potential

Glycosylation

1

N-linked (GlcNAc...) Potential

Glycosylation

1

N-linked (GlcNAc...) Potential

Sequences

Sequence

Length

Mass (Da)

Tools

Q9LFP3 [UniParc].

Last modified March 23, 2010. Version 2.
Checksum: F36A2AEF32C55766
Show »

480

55,363

        10         20         30         40         50         60 
MADLTCTTPF LLYPSLVIIL FFYSINHHNQ IFSSVVDDDP SCRLSSSPQA VFSSFRIFPF 

        70         80         90        100        110        120 
RSSSSCLNIT SNNNSTSEVV VVEEVDEAVE RIEEGLAMAR AAIRKAGEKN LRRDRDRTNN 

       130        140        150        160        170        180 
SDVGVVSNGS VYLNAFTFHQ SHKEMEKRFK IWTYREGEAP LFHKGPLNNI YAIEGQFMDE 

       190        200        210        220        230        240 
IENGNSRFKA ASPEEATVFY IPVGIVNIIR FVYRPYTSYA RDRLQNIVKD YISLISNRYP 

       250        260        270        280        290        300 
YWNRSRGADH FFLSCHDWAP DVSAVDPELY KHFIRALCNA NSSEGFTPMR DVSLPEINIP 

       310        320        330        340        350        360 
HSQLGFVHTG EPPQNRKLLA FFAGGSHGDV RKILFQHWKE KDKDVLVYEN LPKTMNYTKM 

       370        380        390        400        410        420 
MDKAKFCLCP SGWEVASPRI VESLYSGCVP VIIADYYVLP FSDVLNWKTF SVHIPISKMP 

       430        440        450        460        470        480 
DIKKILEAIT EEEYLNMQRR VLEVRKHFVI NRPSKPYDML HMIMHSIWLR RLNVRIPLSQ

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana." Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E., Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K. Fransz P.F. Nature 408:823-826(2000) [PubMed: 11130714] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
[2]	The Arabidopsis Information Resource (TAIR) Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases Cited for: GENOME REANNOTATION. Strain: cv. Columbia.
[3]	"Identification of a xylogalacturonan xylosyltransferase involved in pectin biosynthesis in Arabidopsis." Jensen J.K., Sorensen S.O., Harholt J., Geshi N., Sakuragi Y., Moller I., Zandleven J., Bernal A.J., Jensen N.B., Sorensen C., Pauly M., Beldman G., Willats W.G., Scheller H.V. Plant Cell 20:1289-1302(2008) [PubMed: 18460606] [Abstract] Cited for: IDENTIFICATION.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AL360314 Genomic DNA. Translation: CAB96647.1. Sequence problems. AL360314 Genomic DNA. Translation: CAB96648.1. Sequence problems. CP002688 Genomic DNA. Translation: AED91637.1.
IPI	IPI00534469.
RefSeq	NP_196674.2. NM_121151.2.
3D structure databases
ProteinModelPortal	Q9LFP3.
ModBase	Search...
Protein family/group databases
CAZy	GT47. Glycosyltransferase Family 47.
Proteomic databases
PRIDE	Q9LFP3.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	AT5G11130.1; AT5G11130.1; AT5G11130.
GeneID	830981.
GenomeReviews	Gene locus AT5G11130 in contig BA000015_GR.
KEGG	ath:AT5G11130.
NMPDR	fig\|3702.1.peg.23249.
Organism-specific databases
TAIR	At5g11130.
Phylogenomic databases
eggNOG	KOG1021.
GeneTree	EPGT00070000028243.
HOGENOM	HBG744139.
InParanoid	Q9LFP3.
PhylomeDB	Q9LFP3.
Gene expression databases
Genevestigator	Q9LFP3.
Family and domain databases
InterPro	IPR004263. Exostosin. [Graphical view]
Pfam	PF03016. Exostosin. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

GLYT4_ARATH

Accession

Primary (citable) accession number: Q9LFP3
Secondary accession number(s): Q9LFP4

Entry history

Integrated into UniProtKB/Swiss-Prot:	March 23, 2010
Last sequence update:	March 23, 2010
Last modified:	December 14, 2011
This is version 48 of the entry and version 2 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Plant Protein Annotation Program

Relevant documents

Arabidopsis thaliana

Arabidopsis thaliana: entries and gene names

SIMILARITY comments

Index of protein domains and families

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents