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Protein

Vesicle-associated membrane protein 713

Gene

VAMP713

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Involved in the targeting and/or fusion of transport vesicles to their target membrane.1 Publication

GO - Molecular functioni

GO - Biological processi

  • exocytosis Source: GO_Central
  • protein transport Source: UniProtKB-KW
  • response to salt stress Source: TAIR
  • vesicle fusion Source: GO_Central

Keywordsi

Biological processProtein transport, Transport

Enzyme and pathway databases

ReactomeiR-ATH-8856825 Cargo recognition for clathrin-mediated endocytosis

Names & Taxonomyi

Protein namesi
Recommended name:
Vesicle-associated membrane protein 7131 Publication
Short name:
AtVAMP7131 Publication
Gene namesi
Name:VAMP7131 Publication
Ordered Locus Names:At5g11150Imported
ORF Names:F2I11.40Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

AraportiAT5G11150
TAIRilocus:2147952 AT5G11150

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini2 – 190CytoplasmicSequence analysisAdd BLAST189
Transmembranei191 – 211Helical; Anchor for type IV membrane proteinSequence analysisAdd BLAST21
Topological domaini212 – 221VesicularSequence analysis10

Keywords - Cellular componenti

Membrane, Vacuole

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedBy similarity
ChainiPRO_00002067522 – 221Vesicle-associated membrane protein 713Add BLAST220

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei2N-acetylalanineBy similarity1

Keywords - PTMi

Acetylation

Proteomic databases

PaxDbiQ9LFP1
PRIDEiQ9LFP1

Expressioni

Tissue specificityi

Highly expressed in stems and roots. Detected in flowers and leaves.1 Publication

Gene expression databases

ExpressionAtlasiQ9LFP1 baseline and differential
GenevisibleiQ9LFP1 AT

Interactioni

Subunit structurei

Interacts with subunits of the vacuole protein sorting (HOPS) complex including VPS11, VCL1, VPS18, VPS33, VPS39 and VPS41.1 Publication

GO - Molecular functioni

Protein-protein interaction databases

BioGridi16262, 1 interactor
IntActiQ9LFP1, 1 interactor
STRINGi3702.AT5G11150.1

Structurei

3D structure databases

ProteinModelPortaliQ9LFP1
SMRiQ9LFP1
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini7 – 112LonginPROSITE-ProRule annotationAdd BLAST106
Domaini127 – 187v-SNARE coiled-coil homologyPROSITE-ProRule annotationAdd BLAST61

Domaini

The longin domain is critical for the vacuolar localization.1 Publication

Sequence similaritiesi

Belongs to the synaptobrevin family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG0859 Eukaryota
COG5143 LUCA
HOGENOMiHOG000042711
InParanoidiQ9LFP1
KOiK08515
OMAiDETAGRN
OrthoDBiEOG09360NL1
PhylomeDBiQ9LFP1

Family and domain databases

InterProiView protein in InterPro
IPR011012 Longin-like_dom_sf
IPR010908 Longin_dom
IPR001388 Synaptobrevin
PfamiView protein in Pfam
PF13774 Longin, 1 hit
PF00957 Synaptobrevin, 1 hit
PRINTSiPR00219 SYNAPTOBREVN
SMARTiView protein in SMART
SM01270 Longin, 1 hit
SUPFAMiSSF64356 SSF64356, 1 hit
PROSITEiView protein in PROSITE
PS50859 LONGIN, 1 hit
PS00417 SYNAPTOBREVIN, 1 hit
PS50892 V_SNARE, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9LFP1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAIIFALVAR GTVVLSEFSA TSTNASSISK QILEKLPGND SDSHMSYSQD
60 70 80 90 100
RYIFHVKRTD GLTVLCMADE TAGRNIPFAF LDDIHQRFVK TYGRAIHSAQ
110 120 130 140 150
AYSMNDEFSR VLSQQMEFYS NDPNADRMSR IKGEMSQVRN VMIENIDKVL
160 170 180 190 200
DRGERLELLV DKTENMQGNT FRFRKQARRY RTIMWWRNVK LTIALILVLA
210 220
LVVYIAMAFV CHGPSLPSCF K
Length:221
Mass (Da):25,320
Last modified:October 1, 2000 - v1
Checksum:i09E54407A67A5A3D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL360314 Genomic DNA Translation: CAB96650.1
CP002688 Genomic DNA Translation: AED91639.1
AY091002 mRNA Translation: AAM14024.1
AY122934 mRNA Translation: AAM67467.1
RefSeqiNP_196676.1, NM_121153.5
UniGeneiAt.5977

Genome annotation databases

EnsemblPlantsiAT5G11150.1; AT5G11150.1; AT5G11150
GeneIDi830984
GrameneiAT5G11150.1; AT5G11150.1; AT5G11150
KEGGiath:AT5G11150

Similar proteinsi

Entry informationi

Entry nameiVA713_ARATH
AccessioniPrimary (citable) accession number: Q9LFP1
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 17, 2003
Last sequence update: October 1, 2000
Last modified: May 23, 2018
This is version 118 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

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