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Protein

Cellulose synthase-like protein D2

Gene

CSLD2

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Protein inferred from homologyi

Functioni

Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei422 – 4221Sequence analysis
Active sitei848 – 8481Sequence analysis

GO - Molecular functioni

  • cellulose synthase (UDP-forming) activity Source: InterPro
  • mannan synthase activity Source: TAIR

GO - Biological processi

  • cellulose biosynthetic process Source: InterPro
  • cell wall organization Source: UniProtKB-KW
  • mannosylation Source: GOC
  • response to cold Source: TAIR
  • root hair elongation Source: TAIR
Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Keywords - Biological processi

Cell wall biogenesis/degradation

Enzyme and pathway databases

BioCyciARA:AT5G16910-MONOMER.

Protein family/group databases

CAZyiGT2. Glycosyltransferase Family 2.
TCDBi4.D.3.1.9. the glycan glucosyl transferase (opgh) family.

Names & Taxonomyi

Protein namesi
Recommended name:
Cellulose synthase-like protein D2 (EC:2.4.1.-)
Short name:
AtCslD2
Gene namesi
Name:CSLD2
Ordered Locus Names:At5g16910
ORF Names:F2K13.60
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

TAIRiAT5G16910.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei291 – 31121HelicalSequence analysisAdd
BLAST
Transmembranei322 – 34221HelicalSequence analysisAdd
BLAST
Transmembranei930 – 95021HelicalSequence analysisAdd
BLAST
Transmembranei956 – 97621HelicalSequence analysisAdd
BLAST
Transmembranei1002 – 102221HelicalSequence analysisAdd
BLAST
Transmembranei1046 – 106621HelicalSequence analysisAdd
BLAST
Transmembranei1079 – 109921HelicalSequence analysisAdd
BLAST
Transmembranei1109 – 112921HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

  • endosome Source: TAIR
  • Golgi apparatus Source: TAIR
  • integral component of Golgi membrane Source: TAIR
  • plasma membrane Source: TAIR
  • trans-Golgi network Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Golgi apparatus, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 11451145Cellulose synthase-like protein D2PRO_0000319347Add
BLAST

Proteomic databases

PaxDbiQ9LFL0.
PRIDEiQ9LFL0.

PTM databases

iPTMnetiQ9LFL0.

Expressioni

Gene expression databases

GenevisibleiQ9LFL0. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT5G16910.1.

Structurei

3D structure databases

ProteinModelPortaliQ9LFL0.
SMRiQ9LFL0. Positions 844-946.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG410IEH4. Eukaryota.
COG1215. LUCA.
HOGENOMiHOG000241941.
InParanoidiQ9LFL0.
OMAiDWEEANG.
PhylomeDBiQ9LFL0.

Family and domain databases

Gene3Di3.30.40.10. 1 hit.
InterProiIPR005150. Cellulose_synth.
IPR029044. Nucleotide-diphossugar_trans.
IPR013083. Znf_RING/FYVE/PHD.
[Graphical view]
PfamiPF03552. Cellulose_synt. 1 hit.
[Graphical view]
SUPFAMiSSF53448. SSF53448. 3 hits.

Sequencei

Sequence statusi: Complete.

Q9LFL0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASNKHFDKS RSNLSNNSDI QEPGRPPAGH SVKFAQRTSS GRYINYSRDD
60 70 80 90 100
LDSELGGQDF MSYTVHIPPT PDNQPMDPSI SQKVEEQYVA NSMFTGGFKS
110 120 130 140 150
NTRAHLMHKV IETEPNHPQM AGSKGSSCAI PGCDAKVMSD ERGQDLLPCE
160 170 180 190 200
CDFKICRDCF IDAVKTGGGI CPGCKEPYKN THLTDQVDEN GQQRPMLPGG
210 220 230 240 250
GGSKMERRLS MVKSTNKSAL MRSQTGDFDH NRWLFETTGT YGYGNAFWTK
260 270 280 290 300
DGDFGSGKDG DGDGDGMGME AQDLMSRPWR PLTRKLKIPA GVISPYRLLI
310 320 330 340 350
FIRIVVLALF LTWRVKHQNP DAVWLWGMSV VCELWFALSW LLDQLPKLCP
360 370 380 390 400
INRATDLQVL KEKFETPTAS NPTGKSDLPG FDVFVSTADP EKEPPLVTAN
410 420 430 440 450
TILSILAAEY PVEKLSCYVS DDGGALLTFE AMAEAASFAN IWVPFCRKHA
460 470 480 490 500
IEPRNPDSYF SLKRDPYKNK VKSDFVKDRR RVKREFDEFK VRVNSLPDSI
510 520 530 540 550
RRRSDAYHAR EEIKAMKMQR QNRDDEPMEP VKIPKATWMA DGTHWPGTWL
560 570 580 590 600
TSASDHAKGD HAGIIQVMLK PPSDEPLHGV SEGFLDLTDV DIRLPLLVYV
610 620 630 640 650
SREKRPGYDH NKKAGAMNAL VRASAIMSNG PFILNLDCDH YIYNSEALRE
660 670 680 690 700
GMCFMMDRGG DRLCYVQFPQ RFEGIDPSDR YANHNTVFFD VNMRALDGLM
710 720 730 740 750
GPVYVGTGCL FRRIALYGFN PPRSKDFSPS CWSCCFPRSK KKNIPEENRA
760 770 780 790 800
LRMSDYDDEE MNLSLVPKKF GNSTFLIDSI PVAEFQGRPL ADHPAVKNGR
810 820 830 840 850
PPGALTIPRE LLDASTVAEA IAVISCWYED KTEWGSRIGW IYGSVTEDVV
860 870 880 890 900
TGYRMHNRGW KSVYCVTKRD AFRGTAPINL TDRLHQVLRW ATGSVEIFFS
910 920 930 940 950
RNNALLASSK MKILQRIAYL NVGIYPFTSI FLIVYCFLPA LSLFSGQFIV
960 970 980 990 1000
QTLNVTFLVY LLIISITLCL LALLEIKWSG ISLEEWWRNE QFWLIGGTSA
1010 1020 1030 1040 1050
HLAAVLQGLL KVVAGVEISF TLTSKSGGDD IDDEFADLYM VKWTSLMIPP
1060 1070 1080 1090 1100
ITIIMVNLIA IAVGFSRTIY SVVPQWSKLI GGVFFSFWVL AHLYPFAKGL
1110 1120 1130 1140
MGRRGRTPTI VYVWSGLVAI TISLLWVAIN PPAGNTEIGG NFSFP
Length:1,145
Mass (Da):128,360
Last modified:October 1, 2000 - v1
Checksum:i21A37FD050DC26BC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL391141 Genomic DNA. Translation: CAC01704.1.
CP002688 Genomic DNA. Translation: AED92357.1.
PIRiT51546.
RefSeqiNP_197193.1. NM_121697.3.
UniGeneiAt.20318.

Genome annotation databases

EnsemblPlantsiAT5G16910.1; AT5G16910.1; AT5G16910.
GeneIDi831554.
GrameneiAT5G16910.1; AT5G16910.1; AT5G16910.
KEGGiath:AT5G16910.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL391141 Genomic DNA. Translation: CAC01704.1.
CP002688 Genomic DNA. Translation: AED92357.1.
PIRiT51546.
RefSeqiNP_197193.1. NM_121697.3.
UniGeneiAt.20318.

3D structure databases

ProteinModelPortaliQ9LFL0.
SMRiQ9LFL0. Positions 844-946.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT5G16910.1.

Protein family/group databases

CAZyiGT2. Glycosyltransferase Family 2.
TCDBi4.D.3.1.9. the glycan glucosyl transferase (opgh) family.

PTM databases

iPTMnetiQ9LFL0.

Proteomic databases

PaxDbiQ9LFL0.
PRIDEiQ9LFL0.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G16910.1; AT5G16910.1; AT5G16910.
GeneIDi831554.
GrameneiAT5G16910.1; AT5G16910.1; AT5G16910.
KEGGiath:AT5G16910.

Organism-specific databases

TAIRiAT5G16910.

Phylogenomic databases

eggNOGiENOG410IEH4. Eukaryota.
COG1215. LUCA.
HOGENOMiHOG000241941.
InParanoidiQ9LFL0.
OMAiDWEEANG.
PhylomeDBiQ9LFL0.

Enzyme and pathway databases

BioCyciARA:AT5G16910-MONOMER.

Miscellaneous databases

PROiQ9LFL0.

Gene expression databases

GenevisibleiQ9LFL0. AT.

Family and domain databases

Gene3Di3.30.40.10. 1 hit.
InterProiIPR005150. Cellulose_synth.
IPR029044. Nucleotide-diphossugar_trans.
IPR013083. Znf_RING/FYVE/PHD.
[Graphical view]
PfamiPF03552. Cellulose_synt. 1 hit.
[Graphical view]
SUPFAMiSSF53448. SSF53448. 3 hits.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana."
    Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E., Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.
    , Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D., Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A., Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I., Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T., Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A., McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U., Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G., Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W., Bevan M., Fransz P.F.
    Nature 408:823-826(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. Cited for: GENE FAMILY, NOMENCLATURE.
  4. Cited for: SUBCELLULAR LOCATION.

Entry informationi

Entry nameiCSLD2_ARATH
AccessioniPrimary (citable) accession number: Q9LFL0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 26, 2008
Last sequence update: October 1, 2000
Last modified: February 17, 2016
This is version 83 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.