Q9LF98 (Q9LF98_ARATH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Fructose-bisphosphate aldolase RuleBase RU003994
EC=4.1.2.13 RuleBase RU003994

Gene names

Name:	F8J2_100 EMBL CAB86897.1
Ordered Locus Names:	At3g52930 TAIR At3g52930
ORF Names:	AT3G52930 EMBL AEE79012.1

Organism

Arabidopsis thaliana (Mouse-ear cress) EMBL CAB86897.1

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length	358 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Catalytic activity	D-fructose 1,6-bisphosphate = glycerone phosphate + D-glyceraldehyde 3-phosphate. RuleBase RU003994
Sequence similarities	Belongs to the class I fructose-bisphosphate aldolase family. RuleBase RU003994

Ontologies

Keywords
Biological process	Glycolysis RuleBase RU003994
Molecular function	Lyase RuleBase RU003994
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	glycolysis Inferred from electronic annotation. Source: UniProtKB-KW response to cadmium ion Inferred from expression pattern. Source: TAIR response to karrikin Inferred from expression pattern. Source: TAIR response to salt stress Inferred from expression pattern. Source: TAIR
Cellular component	apoplast Inferred from direct assay. Source: TAIR cell wall Inferred from direct assay. Source: TAIR chloroplast Inferred from direct assay. Source: TAIR cytosol Inferred from direct assay. Source: TAIR mitochondrial envelope Inferred from direct assay. Source: TAIR nucleolus Inferred from direct assay. Source: TAIR plasma membrane Inferred from direct assay. Source: TAIR plasmodesma Inferred from direct assay. Source: TAIR vacuolar membrane Inferred from direct assay. Source: TAIR
Molecular function	copper ion binding Inferred from direct assay. Source: TAIR fructose-bisphosphate aldolase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q9LF98 [UniParc]. Last modified October 1, 2000. Version 1. Checksum: 0E25995B2EE0A319	FASTA	358	38,540
	10 20 30 40 50 60 MSAFTSKFAD ELIANAAYIG TPGKGILAAD ESTGTIGKRL ASINVENVET NRRNLRELLF 70 80 90 100 110 120 TAPGALPCLS GVILFEETLY QKSSDGKLFV DILKEGGVLP GIKVDKGTVE LAGTDGETTT 130 140 150 160 170 180 QGLDGLGDRC KKYYEAGARF AKWRAVLKIG ENEPSEHSIH ENAYGLARYA VICQENGLVP 190 200 210 220 230 240 IVEPEILVDG SHDIQKCAAV TERVLAACYK ALSDHHVLLE GTLLKPNMVT PGSDSPKVSP 250 260 270 280 290 300 EVIAEHTVRA LQRTVPAAVP AIVFLSGGQS EEEATRNLNA MNQLKTKKPW SLSFSFGRAL 310 320 330 340 350 QQSTLKTWAG KEENVKAAQE ALYVRCKANS EATLGTYKGD AKLGDGAAES LHVKDYKY

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana." European Union Chromosome 3 Arabidopsis Sequencing Consortium, Institute for Genomic Research, Kazusa DNA Research Institute Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F. , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S. Nature 408:820-822(2000) [PubMed: 11130713] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
[2]	"Analysis of multiple occurrences of alternative splicing events in Arabidopsis thaliana using novel sequenced full-length cDNAs." Iida K., Fukami-Kobayashi K., Toyoda A., Sakaki Y., Kobayashi M., Seki M., Shinozaki K. DNA Res. 0:0-0(2009) Cited for: NUCLEOTIDE SEQUENCE.
[3]	"Full-length messenger RNA sequences greatly improve genome annotation." Haas B.J., Volfovsky N., Town C.D., Troukhan M., Alexandrov N., Feldmann K.A., Flavell R.B., White O., Salzberg S.L. Genome Biol. 3:RESEARCH0029-RESEARCH0029(2002) [PubMed: 12093376] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.
[4]	"Features of Arabidopsis genes and genome discovered using full-length cDNAs." Alexandrov N.A., Troukhan M.E., Brover V.V., Flavell R.B., Feldmann K.A. Plant Mol. Biol. 60:71-87(2006) Cited for: NUCLEOTIDE SEQUENCE.
[5]	"Arabidopsis cDNA clones." Shinn P., Chen H., Cheuk R., Kim C.J., Koesema E., Meyers M.C., Banh J., Bowser L., Carninci P., Dale J.M., Goldsmith A.D., Hayashizaki Y., Ishida J., Jiang P.X., Jones T., Kamiya A., Karlin-Neumann G., Kawai J. , Lam B., Lee J.M., Lin J., Liu S.X., Miranda M., Narusaka M., Nguyen M., Onodera C.S., Palm C.J., Pham P.K., Quach H.L., Sakurai T., Satou M., Seki M., Southwick A., Tang C.C., Toriumi M., Yamada K., Yamamura Y., Yu G., Yu S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R. Submitted (AUG-2001) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[6]	"Arabidopsis ORF clones." Kim C.J., Chen H., Cheuk R., Meyers M.C., Banh J., Bowser L., Carninci P., Chang E., Dale J.M., Goldsmith A.D., Hayashizaki Y., Ishida J., Jones T., Kamiya A., Karlin-Neumann G., Kawai J., Lam B., Lee J.M. , Lin J., Miranda M., Narusaka M., Nguyen M., Onodera C.S., Palm C.J., Quach H.L., Sakurai T., Satou M., Seki M., Southwick A., Tang C.C., Toriumi M., Wu H.C., Yamada K., Yamamura Y., Yu G., Yu S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R. Submitted (NOV-2001) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[7]	"Arabidopsis cDNA clones." Cheuk R., Chen H., Kim C.J., Koesema E., Meyers M.C., Banh J., Bowser L., Carninci P., Dale J.M., Goldsmith A.D., Hayashizaki Y., Ishida J., Jiang P.X., Jones T., Kamiya A., Karlin-Neumann G., Kawai J., Lam B. , Lee J.M., Lin J., Liu S.X., Miranda M., Narusaka M., Nguyen M., Onodera C.S., Palm C.J., Pham P.K., Quach H.L., Sakurai T., Satou M., Seki M., Southwick A., Tang C.C., Toriumi M., Yamada K., Yamamura Y., Yu G., Yu S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R. Submitted (SEP-2001) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[8]	Arabidopsis TAIR10 Release Swarbreck D., Lamesch P., Wilks C., Huala E. Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[9]	The Arabidopsis Information Resource (TAIR) Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
[10]	Nyakatura G., Fartmann B., Dauner D., Sterr W., Holland R., Weichselgartner M., Mewes H.W., Rudd S., Lemcke K., Mayer K.F.X., Quetier F., Salanoubat M. Submitted (NOV-1999) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[11]	EU Arabidopsis sequencing project Submitted (AUG-2000) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[12]	Brover V., Troukhan M., Alexandrov N., Lu Y.-P., Flavell R., Feldmann K. Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AY052709 mRNA. Translation: AAK96613.1. AY057656 mRNA. Translation: AAL15287.1. AY063718 mRNA. Translation: AAL36068.1. AY087346 mRNA. Translation: AAM64896.1. CP002686 Genomic DNA. Translation: AEE79012.1. AK317380 mRNA. Translation: BAH20051.1. AL132969 Genomic DNA. Translation: CAB86897.1.
IPI	IPI00517861.
PIR	T47550.
RefSeq	NP_190861.1. NM_115153.3.
UniGene	At.25299. At.71433. At.75083.
3D structure databases
HSSP	HSSP built from PDB template 6ALD based on UniProtKB P00883.
ProteinModelPortal	Q9LF98.
SMR	Q9LF98. Positions 3-337.
ModBase	Search...
Protein-protein interaction databases
IntAct	Q9LF98. 4 interactions.
STRING	Q9LF98.
Proteomic databases
PRIDE	Q9LF98.
ProMEX	Q9LF98.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	AT3G52930.1; AT3G52930.1; AT3G52930.
GeneID	824459.
KEGG	ath:AT3G52930.
NMPDR	fig|3702.1.peg.16567.
Organism-specific databases
TAIR	At3g52930.
Phylogenomic databases
GeneTree	EPGT00070000028473.
InParanoid	Q9LF98.
OMA	INQVPLH.
PhylomeDB	Q9LF98.
ProtClustDB	PLN02455.
Gene expression databases
Genevestigator	Q9LF98.
Family and domain databases
InterPro	IPR000741. Aldolase_I. IPR013785. Aldolase_TIM. [Graphical view]
Gene3D	G3DSA:3.20.20.70. Aldolase_TIM. 1 hit.
KO	K01623.
PANTHER	PTHR11627. Aldolase_I. 1 hit.
Pfam	PF00274. Glycolytic. 1 hit. [Graphical view]
PROSITE	PS00158. ALDOLASE_CLASS_I. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q9LF98_ARATH

Accession

Primary (citable) accession number: Q9LF98

Entry history

Integrated into UniProtKB/TrEMBL:	October 1, 2000
Last sequence update:	October 1, 2000
Last modified:	January 25, 2012
This is version 86 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)