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Protein

Transcription factor TCP17

Gene

TCP17

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179).2 Publications

GO - Molecular functioni

  • DNA binding Source: UniProtKB-KW
  • transcription factor activity, sequence-specific DNA binding Source: TAIR

GO - Biological processi

  • cell differentiation Source: TAIR
  • leaf morphogenesis Source: TAIR
  • positive regulation of development, heterochronic Source: TAIR
  • regulation of transcription, DNA-templated Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW

Keywordsi

Molecular functionDevelopmental protein, DNA-binding
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Transcription factor TCP17
Gene namesi
Name:TCP17
Ordered Locus Names:At5g08070
ORF Names:T22D6.10
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

AraportiAT5G08070.
TAIRilocus:2181479. AT5G08070.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003307911 – 242Transcription factor TCP17Add BLAST242

Proteomic databases

PaxDbiQ9LEZ9.
PRIDEiQ9LEZ9.

Expressioni

Tissue specificityi

Expressed in cotyledons, particularly in the vascular region, in leaves, roots, stems, buds, flowers and siliques.1 Publication

Developmental stagei

Expressed during ovule development (PubMed:25378179).1 Publication

Gene expression databases

GenevisibleiQ9LEZ9. AT.

Interactioni

Subunit structurei

Interacts with SPL.2 Publications

Binary interactionsi

Show more details

Protein-protein interaction databases

BioGridi15979. 16 interactors.
IntActiQ9LEZ9. 21 interactors.
STRINGi3702.AT5G08070.1.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini33 – 91TCPPROSITE-ProRule annotationAdd BLAST59

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi196 – 204Poly-Asn9

Phylogenomic databases

eggNOGiENOG410JTVC. Eukaryota.
ENOG41107H4. LUCA.
HOGENOMiHOG000154528.
InParanoidiQ9LEZ9.
OMAiWNNPRIV.
OrthoDBiEOG09360O01.
PhylomeDBiQ9LEZ9.

Family and domain databases

InterProiView protein in InterPro
IPR017887. TF_TCP_subgr.
IPR005333. Transcription_factor_TCP.
PfamiView protein in Pfam
PF03634. TCP. 1 hit.
PROSITEiView protein in PROSITE
PS51369. TCP. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9LEZ9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGIKKEDQKS SLSLLTQRWN NPRIVRVSRA FGGKDRHSKV CTVRGLRDRR
60 70 80 90 100
IRLSVMTAIQ VYDLQERLGL SQPSKVIDWL LEVAKNDVDL LPPLQFPPGF
110 120 130 140 150
HQLNPNLTGL GESFPGVFDL GRTQREALDL EKRKWVNLDH VFDHIDHHNH
160 170 180 190 200
FSNSIQSNKL YFPTITSSSS SYHYNLGHLQ QSLLDQSGNV TVAFSNNYNN
210 220 230 240
NNLNPPAAET MSSLFPTRYP SFLGGGQLQL FSSTSSQPDH IE
Length:242
Mass (Da):27,412
Last modified:October 1, 2000 - v1
Checksum:i925A5F26FD3AF66E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL357612 Genomic DNA. Translation: CAB93708.1.
CP002688 Genomic DNA. Translation: AED91241.1.
CP002688 Genomic DNA. Translation: ANM69189.1.
BT029995 mRNA. Translation: ABN04733.1.
PIRiT50492.
RefSeqiNP_001318505.1. NM_001342977.1.
NP_196424.1. NM_120889.1.
UniGeneiAt.54775.

Genome annotation databases

EnsemblPlantsiAT5G08070.1; AT5G08070.1; AT5G08070.
AT5G08070.2; AT5G08070.2; AT5G08070.
GeneIDi830701.
GrameneiAT5G08070.1; AT5G08070.1; AT5G08070.
AT5G08070.2; AT5G08070.2; AT5G08070.
KEGGiath:AT5G08070.

Similar proteinsi

Entry informationi

Entry nameiTCP17_ARATH
AccessioniPrimary (citable) accession number: Q9LEZ9
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 29, 2008
Last sequence update: October 1, 2000
Last modified: September 27, 2017
This is version 75 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names