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Protein

Transcription factor TCP17

Gene

TCP17

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179).2 Publications

GO - Molecular functioni

  • DNA binding Source: UniProtKB-KW
  • transcription factor activity, sequence-specific DNA binding Source: TAIR

GO - Biological processi

  • cell differentiation Source: TAIR
  • leaf morphogenesis Source: TAIR
  • positive regulation of development, heterochronic Source: TAIR
  • regulation of transcription, DNA-templated Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Developmental protein

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Transcription factor TCP17
Gene namesi
Name:TCP17
Ordered Locus Names:At5g08070
ORF Names:T22D6.10
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

TAIRiAT5G08070.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003307911 – 242Transcription factor TCP17Add BLAST242

Proteomic databases

PaxDbiQ9LEZ9.
PRIDEiQ9LEZ9.

Expressioni

Tissue specificityi

Expressed in cotyledons, particularly in the vascular region, in leaves, roots, stems, buds, flowers and siliques.1 Publication

Developmental stagei

Expressed during ovule development (PubMed:25378179).1 Publication

Gene expression databases

GenevisibleiQ9LEZ9. AT.

Interactioni

Subunit structurei

Interacts with SPL.2 Publications

Protein-protein interaction databases

BioGridi15979. 16 interactors.
STRINGi3702.AT5G08070.1.

Structurei

3D structure databases

ProteinModelPortaliQ9LEZ9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini33 – 91TCPPROSITE-ProRule annotationAdd BLAST59

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi196 – 204Poly-Asn9

Sequence similaritiesi

Contains 1 TCP domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG410JTVC. Eukaryota.
ENOG41107H4. LUCA.
HOGENOMiHOG000154528.
InParanoidiQ9LEZ9.
OMAiWNNPRIV.
OrthoDBiEOG09360O01.
PhylomeDBiQ9LEZ9.

Family and domain databases

InterProiIPR017887. TF_TCP_subgr.
IPR005333. Transcription_factor_TCP.
[Graphical view]
PfamiPF03634. TCP. 1 hit.
[Graphical view]
PROSITEiPS51369. TCP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9LEZ9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGIKKEDQKS SLSLLTQRWN NPRIVRVSRA FGGKDRHSKV CTVRGLRDRR
60 70 80 90 100
IRLSVMTAIQ VYDLQERLGL SQPSKVIDWL LEVAKNDVDL LPPLQFPPGF
110 120 130 140 150
HQLNPNLTGL GESFPGVFDL GRTQREALDL EKRKWVNLDH VFDHIDHHNH
160 170 180 190 200
FSNSIQSNKL YFPTITSSSS SYHYNLGHLQ QSLLDQSGNV TVAFSNNYNN
210 220 230 240
NNLNPPAAET MSSLFPTRYP SFLGGGQLQL FSSTSSQPDH IE
Length:242
Mass (Da):27,412
Last modified:October 1, 2000 - v1
Checksum:i925A5F26FD3AF66E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL357612 Genomic DNA. Translation: CAB93708.1.
CP002688 Genomic DNA. Translation: AED91241.1.
BT029995 mRNA. Translation: ABN04733.1.
PIRiT50492.
RefSeqiNP_196424.1. NM_120889.1.
UniGeneiAt.54775.

Genome annotation databases

EnsemblPlantsiAT5G08070.1; AT5G08070.1; AT5G08070.
GeneIDi830701.
GrameneiAT5G08070.1; AT5G08070.1; AT5G08070.
KEGGiath:AT5G08070.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL357612 Genomic DNA. Translation: CAB93708.1.
CP002688 Genomic DNA. Translation: AED91241.1.
BT029995 mRNA. Translation: ABN04733.1.
PIRiT50492.
RefSeqiNP_196424.1. NM_120889.1.
UniGeneiAt.54775.

3D structure databases

ProteinModelPortaliQ9LEZ9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi15979. 16 interactors.
STRINGi3702.AT5G08070.1.

Proteomic databases

PaxDbiQ9LEZ9.
PRIDEiQ9LEZ9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G08070.1; AT5G08070.1; AT5G08070.
GeneIDi830701.
GrameneiAT5G08070.1; AT5G08070.1; AT5G08070.
KEGGiath:AT5G08070.

Organism-specific databases

TAIRiAT5G08070.

Phylogenomic databases

eggNOGiENOG410JTVC. Eukaryota.
ENOG41107H4. LUCA.
HOGENOMiHOG000154528.
InParanoidiQ9LEZ9.
OMAiWNNPRIV.
OrthoDBiEOG09360O01.
PhylomeDBiQ9LEZ9.

Miscellaneous databases

PROiQ9LEZ9.

Gene expression databases

GenevisibleiQ9LEZ9. AT.

Family and domain databases

InterProiIPR017887. TF_TCP_subgr.
IPR005333. Transcription_factor_TCP.
[Graphical view]
PfamiPF03634. TCP. 1 hit.
[Graphical view]
PROSITEiPS51369. TCP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiTCP17_ARATH
AccessioniPrimary (citable) accession number: Q9LEZ9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 29, 2008
Last sequence update: October 1, 2000
Last modified: November 2, 2016
This is version 71 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.