Q9LEX0 (P2A13_ARATH) Reviewed, UniProtKB/Swiss-Prot
Last modified
December 14, 2011.
Version 63.
History...
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: F-box protein PP2-A13 Alternative name(s): Protein PHLOEM PROTEIN 2-LIKE A13 Short name=AtPP2-A13 SKP1-interacting partner 9 | ||||||||
| Gene names |
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| Organism | Arabidopsis thaliana (Mouse-ear cress) | ||||||||
| Taxonomic identifier | 3702 [NCBI] | ||||||||
| Taxonomic lineage | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis |
Protein attributes
| Sequence length | 290 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins By similarity. |
| Pathway | |
| Subunit structure | Part of a SCF (ASK-cullin-F-box) protein ligase complex By similarity. Interacts with SKP1A/ASK1, SKP1B/ASK2, ASK5, ASK11 and ASK13. Ref.4 Ref.5 |
| Subcellular location | Nucleus By similarity. |
| Domain | The F-box is necessary for the interaction with ASK proteins By similarity. |
| Sequence similarities | Contains 1 F-box domain. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Ubl conjugation pathway |
| Cellular component | Nucleus |
| Coding sequence diversity | Alternative splicing |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological process | response to wounding Inferred from expression pattern. Source: TAIR |
| Cellular component | nucleus Inferred from electronic annotation. Source: UniProtKB-SubCell |
| Molecular function | protein binding Inferred from physical interaction Ref.4. Source: IntAct |
| Complete GO annotation... | |
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| SKP1A | Q39255 | 4 | EBI-604261,EBI-532357 | |
| SKP1B | Q9FHW7 | 6 | EBI-604261,EBI-604076 |
Alternative products
| This entry describes 1 isoform produced by alternative splicing. [Select] Note: A number of isoforms are produced. According to EST sequences. | ||||||
| Isoform 1 (identifier: Q9LEX0-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. |
Sequence annotation (Features)
Sequences
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References
Web resources
| PlantsUBQ A functional genomics database for the ubiquitin/26S proteasome proteolytic pathway in plants |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AL358732 Genomic DNA. Translation: CAB94142.1. CP002686 Genomic DNA. Translation: AEE80147.1. AY034967 mRNA. Translation: AAK59472.2. BT000895 mRNA. Translation: AAN41295.1. |
| IPI | IPI00540042. |
| PIR | T50527. |
| RefSeq | NP_567108.2. NM_115970.3. |
| UniGene | At.44960. At.74763. At.74871. |
3D structure databases | |
| ProteinModelPortal | Q9LEX0. |
| SMR | Q9LEX0. Positions 25-68. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q9LEX0. 8 interactions. |
| STRING | Q9LEX0. |
Proteomic databases | |
| PRIDE | Q9LEX0. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| EnsemblPlants | AT3G61060.1; AT3G61060.1; AT3G61060. |
| GeneID | 825278. |
| GenomeReviews | Gene locus AT3G61060 in contig BA000014_GR. |
| KEGG | ath:AT3G61060. |
| NMPDR | fig|3702.1.peg.17476. |
Organism-specific databases | |
| TAIR | At3g61060. |
Phylogenomic databases | |
| GeneTree | EPGT00070000028246. |
| HOGENOM | HBG317035. |
| InParanoid | Q9LEX0. |
| PhylomeDB | Q9LEX0. |
| ProtClustDB | CLSN2682374. |
Gene expression databases | |
| Genevestigator | Q9LEX0. |
Family and domain databases | |
| InterPro | IPR001810. F-box_dom_cyclin-like. IPR022364. F-box_dom_Skp2-like. [Graphical view] |
| SMART | SM00256. FBOX. 1 hit. [Graphical view] |
| SUPFAM | SSF81383. F-box_dom_Skp2-like. 1 hit. |
| PROSITE | PS50181. FBOX. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Entry information
| Entry name | P2A13_ARATH | ||||||||
| Accession | Primary (citable) accession number: Q9LEX0 Secondary accession number(s): Q3EAG4, Q94CC2 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Plant Protein Annotation Program | ||||||||
Relevant documents
| Arabidopsis thaliana Arabidopsis thaliana: entries and gene names |
| PATHWAY comments Index of metabolic and biosynthesis pathways |
| SIMILARITY comments Index of protein domains and families |

Clusters with