Q9LDY2 (Q9LDY2_ARATH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
2-oxoisovalerate dehydrogenase E1 component, beta subunit EMBL AEE75357.1

Submitted name:
At3g13450 EMBL ABD85160.1
Submitted name:
Branched chain alpha-keto acid dehydrogenase E1 beta subunit EMBL BAB01752.1

Gene names

Name:	DIN4 EMBL AEE75357.1
Synonyms:	din4 EMBL AAF35281.1
Ordered Locus Names:	At3g13450 TAIR At3g13450 EMBL BAF01133.1
ORF Names:	AT3G13450 EMBL AEE75357.1

Organism

Arabidopsis thaliana (Mouse-ear cress) EMBL BAB01752.1

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length	358 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Molecular function	catalytic activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q9LDY2 [UniParc]. Last modified October 1, 2000. Version 1. Checksum: 3F708CBEC7D82C1B	FASTA	358	39,419
	10 20 30 40 50 60 MAAALVRRFC RGSSFPVSGH GYRMLSTVEN VSESGKSMNL YSAINQALHI ALETDPRSYV 70 80 90 100 110 120 FGEDVGFGGV FRCTTGLAER FGKSRVFNTP LCEQGIVGFG IGLAAMGNRV IAEIQFADYI 130 140 150 160 170 180 FPAFDQIVNE AAKFRYRSGN QFNCGGLTIR APYGAVGHGG HYHSQSPEAF FCHVPGIKVV 190 200 210 220 230 240 IPRSPREAKG LLLSSIRDPN PVVFFEPKWL YRQAVEDVPE DDYMIPLSEA EVMREGSDIT 250 260 270 280 290 300 LVGWGAQLTI MEQACLDAEN EGISCELIDL KTLIPWDKEI VETSVRKTGR LLISHEAPVT 310 320 330 340 350 GGFGAEIAAT IVERCFLRLE APVSRVCGLD TPFPLVFEPF YMPTKNKILD AIRSTVNY

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana." European Union Chromosome 3 Arabidopsis Sequencing Consortium, Institute for Genomic Research, Kazusa DNA Research Institute Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F. , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S. Nature 408:820-822(2000) [PubMed: 11130713] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
[2]	"Isolation and characterization of cDNA clones for the e1beta and E2 subunits of the branched-chain alpha-ketoacid dehydrogenase complex in Arabidopsis." Fujiki Y., Sato T., Ito M., Watanabe A. J. Biol. Chem. 275:6007-6013(2000) [PubMed: 10681595] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.
[3]	"Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC clones." Nakamura Y. DNA Res. 7:217-221(2000) [PubMed: 10907853] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.
[4]	Arabidopsis TAIR10 Release Swarbreck D., Lamesch P., Wilks C., Huala E. Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[5]	The Arabidopsis Information Resource (TAIR) Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
[6]	"Arabidopsis ORF clones." Shinn P., Chen H., Kim C.J., Ecker J.R. Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[7]	Kaneko T., Kato T., Sato S., Nakamura Y., Asamizu E., Tabata S. Submitted (OCT-1999) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[8]	"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs." Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Morosawa T., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K. , Akiyama K., Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K. Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AF145452 mRNA. Translation: AAF35281.1. BT024889 mRNA. Translation: ABD85160.1. CP002686 Genomic DNA. Translation: AEE75357.1. AP000603 Genomic DNA. Translation: BAB01752.1. AK229269 mRNA. Translation: BAF01133.1.
IPI	IPI00527961.
RefSeq	NP_187954.1. NM_112191.3.
UniGene	At.20074. At.24512.
3D structure databases
HSSP	HSSP built from PDB template 1OLU based on UniProtKB P21953.
ProteinModelPortal	Q9LDY2.
SMR	Q9LDY2. Positions 36-358.
ModBase	Search...
Protein-protein interaction databases
STRING	Q9LDY2.
Proteomic databases
PRIDE	Q9LDY2.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	AT3G13450.1; AT3G13450.1; AT3G13450.
GeneID	820547.
GenomeReviews	Gene locus AT3G13450 in contig BA000014_GR.
KEGG	ath:AT3G13450.
NMPDR	fig|3702.1.peg.13451.
Organism-specific databases
TAIR	At3g13450.
Phylogenomic databases
eggNOG	KOG0525.
GeneTree	EPGT00070000030110.
HOGENOM	HBG753264.
InParanoid	Q9LDY2.
OMA	WDKEIVE.
PhylomeDB	Q9LDY2.
ProtClustDB	CLSN2682656.
Gene expression databases
Genevestigator	Q9LDY2.
Family and domain databases
InterPro	IPR009014. Transketo_C/Pyr-ferredox_oxred. IPR015941. Transketolase-like_C. IPR005475. Transketolase-like_Pyr-bd. IPR005476. Transketolase_C. [Graphical view]
Gene3D	G3DSA:3.40.50.920. Transketo_C_like. 1 hit.
KO	K00167.
Pfam	PF02779. Transket_pyr. 1 hit. PF02780. Transketolase_C. 1 hit. [Graphical view]
SMART	SM00861. Transket_pyr. 1 hit. [Graphical view]
SUPFAM	SSF52922. Transketo_C_like. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q9LDY2_ARATH

Accession

Primary (citable) accession number: Q9LDY2

Entry history

Integrated into UniProtKB/TrEMBL:	October 1, 2000
Last sequence update:	October 1, 2000
Last modified:	January 25, 2012
This is version 69 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)