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Protein

Scarecrow-like transcription factor PAT1

Gene

PAT1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at transcript leveli

Functioni

Probable transcription factor involved in phytochrome A (phyA) signal transduction.1 Publication

GO - Molecular functioni

  • sequence-specific DNA binding Source: GO_Central
  • signal transducer activity Source: TAIR
  • transcription factor activity, sequence-specific DNA binding Source: TAIR

GO - Biological processi

  • photomorphogenesis Source: TAIR
  • regulation of transcription, DNA-templated Source: GO_Central
  • transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Scarecrow-like transcription factor PAT1
Alternative name(s):
GRAS family protein 29
Short name:
AtGRAS-29
Protein PHYTOCHROME A SIGNAL TRANSDUCTION 1
Gene namesi
Name:PAT1
Ordered Locus Names:At5g48150
ORF Names:MIF21.4
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

TAIRiAT5G48150.

Subcellular locationi

  • Cytoplasm 1 Publication

GO - Cellular componenti

  • cytoplasm Source: TAIR
  • nucleus Source: GO_Central
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

Pathology & Biotechi

Disruption phenotypei

Plants display reduced response to far-red (FR) light. Seedlings develop long hypocotyls, unfolded cotyledons, no significant anthocyanin accumulation, and greening after FR light.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 490490Scarecrow-like transcription factor PAT1PRO_0000350845Add
BLAST

Proteomic databases

PaxDbiQ9LDL7.
PRIDEiQ9LDL7.

Expressioni

Gene expression databases

ExpressionAtlasiQ9LDL7. baseline and differential.
GenevisibleiQ9LDL7. AT.

Interactioni

Protein-protein interaction databases

BioGridi20114. 2 interactions.
STRINGi3702.AT5G48150.1.

Family & Domainsi

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi228 – 2325VHIID

Sequence similaritiesi

Belongs to the GRAS family.Curated

Phylogenomic databases

eggNOGiENOG410IPGZ. Eukaryota.
ENOG4111JS8. LUCA.
HOGENOMiHOG000238577.
InParanoidiQ9LDL7.
OMAiFMETMNY.
OrthoDBiEOG093608O3.
PhylomeDBiQ9LDL7.

Family and domain databases

InterProiIPR005202. TF_GRAS.
[Graphical view]
PfamiPF03514. GRAS. 1 hit.
[Graphical view]
PROSITEiPS50985. GRAS. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9LDL7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MYKQPRQELE AYYFEPNSVE KLRYLPVNNS RKRFCTLEPF PDSPPYNALS
60 70 80 90 100
TATYDDTCGS CVTDELNDFK HKIREIETVM MGPDSLDLLV DCTDSFDSTA
110 120 130 140 150
SQEINGWRST LEAISRRDLR ADLVSCAKAM SENDLMMAHS MMEKLRQMVS
160 170 180 190 200
VSGEPIQRLG AYLLEGLVAQ LASSGSSIYK ALNRCPEPAS TELLSYMHIL
210 220 230 240 250
YEVCPYFKFG YMSANGAIAE AMKEENRVHI IDFQIGQGSQ WVTLIQAFAA
260 270 280 290 300
RPGGPPRIRI TGIDDMTSAY ARGGGLSIVG NRLAKLAKQF NVPFEFNSVS
310 320 330 340 350
VSVSEVKPKN LGVRPGEALA VNFAFVLHHM PDESVSTENH RDRLLRMVKS
360 370 380 390 400
LSPKVVTLVE QESNTNTAAF FPRFMETMNY YAAMFESIDV TLPRDHKQRI
410 420 430 440 450
NVEQHCLARD VVNIIACEGA DRVERHELLG KWRSRFGMAG FTPYPLSPLV
460 470 480 490
NSTIKSLLRN YSDKYRLEER DGALYLGWMH RDLVASCAWK
Length:490
Mass (Da):55,290
Last modified:October 1, 2000 - v1
Checksum:i843A48A2F12C84A5
GO

Sequence cautioni

The sequence BAC42147 differs from that shown. Reason: Erroneous initiation. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF153443 mRNA. Translation: AAF73237.1.
AB023039 Genomic DNA. Translation: BAA96995.1.
CP002688 Genomic DNA. Translation: AED95624.1.
CP002688 Genomic DNA. Translation: AED95625.1.
BT025326 mRNA. Translation: ABF57282.1.
AK117483 mRNA. Translation: BAC42147.1. Different initiation.
RefSeqiNP_199626.1. NM_124189.5.
NP_974903.1. NM_203174.2.
UniGeneiAt.7076.

Genome annotation databases

EnsemblPlantsiAT5G48150.1; AT5G48150.1; AT5G48150.
AT5G48150.2; AT5G48150.2; AT5G48150.
GeneIDi834867.
GrameneiAT5G48150.1; AT5G48150.1; AT5G48150.
AT5G48150.2; AT5G48150.2; AT5G48150.
KEGGiath:AT5G48150.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF153443 mRNA. Translation: AAF73237.1.
AB023039 Genomic DNA. Translation: BAA96995.1.
CP002688 Genomic DNA. Translation: AED95624.1.
CP002688 Genomic DNA. Translation: AED95625.1.
BT025326 mRNA. Translation: ABF57282.1.
AK117483 mRNA. Translation: BAC42147.1. Different initiation.
RefSeqiNP_199626.1. NM_124189.5.
NP_974903.1. NM_203174.2.
UniGeneiAt.7076.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi20114. 2 interactions.
STRINGi3702.AT5G48150.1.

Proteomic databases

PaxDbiQ9LDL7.
PRIDEiQ9LDL7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G48150.1; AT5G48150.1; AT5G48150.
AT5G48150.2; AT5G48150.2; AT5G48150.
GeneIDi834867.
GrameneiAT5G48150.1; AT5G48150.1; AT5G48150.
AT5G48150.2; AT5G48150.2; AT5G48150.
KEGGiath:AT5G48150.

Organism-specific databases

TAIRiAT5G48150.

Phylogenomic databases

eggNOGiENOG410IPGZ. Eukaryota.
ENOG4111JS8. LUCA.
HOGENOMiHOG000238577.
InParanoidiQ9LDL7.
OMAiFMETMNY.
OrthoDBiEOG093608O3.
PhylomeDBiQ9LDL7.

Miscellaneous databases

PROiQ9LDL7.

Gene expression databases

ExpressionAtlasiQ9LDL7. baseline and differential.
GenevisibleiQ9LDL7. AT.

Family and domain databases

InterProiIPR005202. TF_GRAS.
[Graphical view]
PfamiPF03514. GRAS. 1 hit.
[Graphical view]
PROSITEiPS50985. GRAS. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiPAT1_ARATH
AccessioniPrimary (citable) accession number: Q9LDL7
Secondary accession number(s): Q8GYN7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 23, 2008
Last sequence update: October 1, 2000
Last modified: September 7, 2016
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.