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Q9LDA7 (P2C39_ARATH) Reviewed, UniProtKB/Swiss-Prot

Last modified June 11, 2014. Version 84. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Probable protein phosphatase 2C 39

Short name=AtPP2C39
EC=3.1.3.16
Gene names
Ordered Locus Names:At3g15260
ORF Names:K7L4.6
OrganismArabidopsis thaliana (Mouse-ear cress) [Reference proteome]
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis

Protein attributes

Sequence length289 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Catalytic activity

[a protein]-serine/threonine phosphate + H2O = [a protein]-serine/threonine + phosphate.

Cofactor

Binds 2 magnesium or manganese ions per subunit By similarity.

Sequence similarities

Belongs to the PP2C family.

Contains 1 PP2C-like domain.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 289289Probable protein phosphatase 2C 39
PRO_0000367964

Regions

Domain40 – 281242PP2C-like

Sites

Metal binding781Manganese 1 By similarity
Metal binding781Manganese 2 By similarity
Metal binding791Manganese 1; via carbonyl oxygen By similarity
Metal binding2401Manganese 2 By similarity
Metal binding2791Manganese 2 By similarity

Experimental info

Sequence conflict551M → I in AAM53328. Ref.4

Sequences

Sequence LengthMass (Da)Tools
Q9LDA7 [UniParc].

Last modified October 1, 2000. Version 1.
Checksum: D37C3DE3BF2F481B

FASTA28931,630
        10         20         30         40         50         60 
MTGREILHKM KESVKEKVGL GASASSADSG KGKSKMLKQI THGFHLVKGK AFHEMEDYVV 

        70         80         90        100        110        120 
AKFKEVDDNE LGLFAIFDGH LSHEIPDYLC SHLFENILKE PNFWQEPEKA IKKAYYITDT 

       130        140        150        160        170        180 
TILDKADDLG KGGSTAVTAI LINCQKLVVA NVGDSRAVIC QNGVAKPLSV DHEPNMEKDE 

       190        200        210        220        230        240 
IENRGGFVSN FPGDVPRVDG QLAVARAFGD KSLKMHLSSE PYVTVEIIDD DAEFLILASD 

       250        260        270        280 
GLWKVMSNQE AVDSIKGIKD AKAAAKHLAE EAVARKSSDD ISVVVVKFQ 

« Hide

References

« Hide 'large scale' references
[1]"Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC clones."
Kaneko T., Katoh T., Sato S., Nakamura Y., Asamizu E., Tabata S.
DNA Res. 7:217-221(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[2]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Columbia.
[3]"Functional annotation of a full-length Arabidopsis cDNA collection."
Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T., Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y., Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K., Shinagawa A., Shinozaki K.
Science 296:141-145(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Columbia.
[4]"Empirical analysis of transcriptional activity in the Arabidopsis genome."
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. expand/collapse author list , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Columbia.
[5]"Genome-wide and expression analysis of protein phosphatase 2C in rice and Arabidopsis."
Xue T., Wang D., Zhang S., Ehlting J., Ni F., Jacab S., Zheng C., Zhong Y.
BMC Genomics 9:550-550(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: GENE FAMILY, NOMENCLATURE.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP000413 Genomic DNA. Translation: BAB02155.1.
CP002686 Genomic DNA. Translation: AEE75637.1.
CP002686 Genomic DNA. Translation: AEE75638.1.
AK117480 mRNA. Translation: BAC42144.1.
AY120770 mRNA. Translation: AAM53328.1.
BT008532 mRNA. Translation: AAP40359.1.
RefSeqNP_188144.1. NM_112389.3.
NP_974318.1. NM_202589.1.
UniGeneAt.28162.
At.64997.

3D structure databases

ProteinModelPortalQ9LDA7.
SMRQ9LDA7. Positions 54-289.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

BioGrid6091. 1 interaction.
IntActQ9LDA7. 1 interaction.
MINTMINT-8390618.

Proteomic databases

PaxDbQ9LDA7.
PRIDEQ9LDA7.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT3G15260.1; AT3G15260.1; AT3G15260.
AT3G15260.2; AT3G15260.2; AT3G15260.
GeneID820757.
KEGGath:AT3G15260.

Organism-specific databases

TAIRAT3G15260.

Phylogenomic databases

eggNOGCOG0631.
HOGENOMHOG000233896.
InParanoidQ9LDA7.
OMAHLSHEIP.
PhylomeDBQ9LDA7.

Enzyme and pathway databases

BioCycARA:AT3G15260-MONOMER.
ARA:GQT-1952-MONOMER.

Gene expression databases

GenevestigatorQ9LDA7.

Family and domain databases

Gene3D3.60.40.10. 1 hit.
InterProIPR001932. PP2C-like_dom.
IPR015655. Protein_Pase_2C.
[Graphical view]
PANTHERPTHR13832. PTHR13832. 1 hit.
PfamPF00481. PP2C. 1 hit.
[Graphical view]
SMARTSM00331. PP2C_SIG. 1 hit.
SM00332. PP2Cc. 1 hit.
[Graphical view]
SUPFAMSSF81606. SSF81606. 1 hit.
ProtoNetSearch...

Entry information

Entry nameP2C39_ARATH
AccessionPrimary (citable) accession number: Q9LDA7
Secondary accession number(s): Q8L834
Entry history
Integrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: October 1, 2000
Last modified: June 11, 2014
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Arabidopsis thaliana

Arabidopsis thaliana: entries and gene names