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Protein

Probable protein phosphatase 2C 39

Gene

At3g15260

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Catalytic activityi

[a protein]-serine/threonine phosphate + H2O = [a protein]-serine/threonine + phosphate.

Cofactori

Mg2+By similarity, Mn2+By similarityNote: Binds 2 magnesium or manganese ions per subunit.By similarity

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi78 – 781Manganese 1By similarity
Metal bindingi78 – 781Manganese 2By similarity
Metal bindingi79 – 791Manganese 1; via carbonyl oxygenBy similarity
Metal bindingi240 – 2401Manganese 2By similarity
Metal bindingi279 – 2791Manganese 2By similarity

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. phosphoprotein phosphatase activity Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Hydrolase, Protein phosphatase

Keywords - Ligandi

Magnesium, Manganese, Metal-binding

Enzyme and pathway databases

BioCyciARA:AT3G15260-MONOMER.
ARA:GQT-1952-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Probable protein phosphatase 2C 39 (EC:3.1.3.16)
Short name:
AtPP2C39
Gene namesi
Ordered Locus Names:At3g15260
ORF Names:K7L4.6
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548: Chromosome 3

Organism-specific databases

TAIRiAT3G15260.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 289289Probable protein phosphatase 2C 39PRO_0000367964Add
BLAST

Proteomic databases

PaxDbiQ9LDA7.
PRIDEiQ9LDA7.

Expressioni

Gene expression databases

GenevestigatoriQ9LDA7.

Interactioni

Protein-protein interaction databases

BioGridi6091. 1 interaction.
IntActiQ9LDA7. 1 interaction.
MINTiMINT-8390618.

Structurei

3D structure databases

ProteinModelPortaliQ9LDA7.
SMRiQ9LDA7. Positions 54-289.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini40 – 281242PP2C-likeAdd
BLAST

Sequence similaritiesi

Belongs to the PP2C family.Curated
Contains 1 PP2C-like domain.Curated

Phylogenomic databases

eggNOGiCOG0631.
HOGENOMiHOG000233896.
InParanoidiQ9LDA7.
OMAiAFHEMED.
PhylomeDBiQ9LDA7.

Family and domain databases

Gene3Di3.60.40.10. 1 hit.
InterProiIPR001932. PP2C-like_dom.
IPR015655. Protein_Pase_2C.
[Graphical view]
PANTHERiPTHR13832. PTHR13832. 1 hit.
PfamiPF00481. PP2C. 1 hit.
[Graphical view]
SMARTiSM00331. PP2C_SIG. 1 hit.
SM00332. PP2Cc. 1 hit.
[Graphical view]
SUPFAMiSSF81606. SSF81606. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9LDA7-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTGREILHKM KESVKEKVGL GASASSADSG KGKSKMLKQI THGFHLVKGK
60 70 80 90 100
AFHEMEDYVV AKFKEVDDNE LGLFAIFDGH LSHEIPDYLC SHLFENILKE
110 120 130 140 150
PNFWQEPEKA IKKAYYITDT TILDKADDLG KGGSTAVTAI LINCQKLVVA
160 170 180 190 200
NVGDSRAVIC QNGVAKPLSV DHEPNMEKDE IENRGGFVSN FPGDVPRVDG
210 220 230 240 250
QLAVARAFGD KSLKMHLSSE PYVTVEIIDD DAEFLILASD GLWKVMSNQE
260 270 280
AVDSIKGIKD AKAAAKHLAE EAVARKSSDD ISVVVVKFQ
Length:289
Mass (Da):31,630
Last modified:October 1, 2000 - v1
Checksum:iD37C3DE3BF2F481B
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti55 – 551M → I in AAM53328. (PubMed:14593172)Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP000413 Genomic DNA. Translation: BAB02155.1.
CP002686 Genomic DNA. Translation: AEE75637.1.
CP002686 Genomic DNA. Translation: AEE75638.1.
AK117480 mRNA. Translation: BAC42144.1.
AY120770 mRNA. Translation: AAM53328.1.
BT008532 mRNA. Translation: AAP40359.1.
RefSeqiNP_188144.1. NM_112389.3.
NP_974318.1. NM_202589.1.
UniGeneiAt.28162.
At.64997.

Genome annotation databases

EnsemblPlantsiAT3G15260.1; AT3G15260.1; AT3G15260.
AT3G15260.2; AT3G15260.2; AT3G15260.
GeneIDi820757.
KEGGiath:AT3G15260.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP000413 Genomic DNA. Translation: BAB02155.1.
CP002686 Genomic DNA. Translation: AEE75637.1.
CP002686 Genomic DNA. Translation: AEE75638.1.
AK117480 mRNA. Translation: BAC42144.1.
AY120770 mRNA. Translation: AAM53328.1.
BT008532 mRNA. Translation: AAP40359.1.
RefSeqiNP_188144.1. NM_112389.3.
NP_974318.1. NM_202589.1.
UniGeneiAt.28162.
At.64997.

3D structure databases

ProteinModelPortaliQ9LDA7.
SMRiQ9LDA7. Positions 54-289.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi6091. 1 interaction.
IntActiQ9LDA7. 1 interaction.
MINTiMINT-8390618.

Proteomic databases

PaxDbiQ9LDA7.
PRIDEiQ9LDA7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G15260.1; AT3G15260.1; AT3G15260.
AT3G15260.2; AT3G15260.2; AT3G15260.
GeneIDi820757.
KEGGiath:AT3G15260.

Organism-specific databases

TAIRiAT3G15260.

Phylogenomic databases

eggNOGiCOG0631.
HOGENOMiHOG000233896.
InParanoidiQ9LDA7.
OMAiAFHEMED.
PhylomeDBiQ9LDA7.

Enzyme and pathway databases

BioCyciARA:AT3G15260-MONOMER.
ARA:GQT-1952-MONOMER.

Gene expression databases

GenevestigatoriQ9LDA7.

Family and domain databases

Gene3Di3.60.40.10. 1 hit.
InterProiIPR001932. PP2C-like_dom.
IPR015655. Protein_Pase_2C.
[Graphical view]
PANTHERiPTHR13832. PTHR13832. 1 hit.
PfamiPF00481. PP2C. 1 hit.
[Graphical view]
SMARTiSM00331. PP2C_SIG. 1 hit.
SM00332. PP2Cc. 1 hit.
[Graphical view]
SUPFAMiSSF81606. SSF81606. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC clones."
    Kaneko T., Katoh T., Sato S., Nakamura Y., Asamizu E., Tabata S.
    DNA Res. 7:217-221(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  4. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  5. "Genome-wide and expression analysis of protein phosphatase 2C in rice and Arabidopsis."
    Xue T., Wang D., Zhang S., Ehlting J., Ni F., Jacab S., Zheng C., Zhong Y.
    BMC Genomics 9:550-550(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY, NOMENCLATURE.

Entry informationi

Entry nameiP2C39_ARATH
AccessioniPrimary (citable) accession number: Q9LDA7
Secondary accession number(s): Q8L834
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: October 1, 2000
Last modified: January 7, 2015
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.