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Q9LDA7

- P2C39_ARATH

UniProt

Q9LDA7 - P2C39_ARATH

Protein

Probable protein phosphatase 2C 39

Gene

At3g15260

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 85 (01 Oct 2014)
      Sequence version 1 (01 Oct 2000)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    [a protein]-serine/threonine phosphate + H2O = [a protein]-serine/threonine + phosphate.

    Cofactori

    Binds 2 magnesium or manganese ions per subunit.By similarity

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi78 – 781Manganese 1By similarity
    Metal bindingi78 – 781Manganese 2By similarity
    Metal bindingi79 – 791Manganese 1; via carbonyl oxygenBy similarity
    Metal bindingi240 – 2401Manganese 2By similarity
    Metal bindingi279 – 2791Manganese 2By similarity

    GO - Molecular functioni

    1. metal ion binding Source: UniProtKB-KW
    2. phosphoprotein phosphatase activity Source: UniProtKB-KW

    Keywords - Molecular functioni

    Hydrolase, Protein phosphatase

    Keywords - Ligandi

    Magnesium, Manganese, Metal-binding

    Enzyme and pathway databases

    BioCyciARA:AT3G15260-MONOMER.
    ARA:GQT-1952-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Probable protein phosphatase 2C 39 (EC:3.1.3.16)
    Short name:
    AtPP2C39
    Gene namesi
    Ordered Locus Names:At3g15260
    ORF Names:K7L4.6
    OrganismiArabidopsis thaliana (Mouse-ear cress)
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Chromosome 3

    Organism-specific databases

    TAIRiAT3G15260.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 289289Probable protein phosphatase 2C 39PRO_0000367964Add
    BLAST

    Proteomic databases

    PaxDbiQ9LDA7.
    PRIDEiQ9LDA7.

    Expressioni

    Gene expression databases

    GenevestigatoriQ9LDA7.

    Interactioni

    Protein-protein interaction databases

    BioGridi6091. 1 interaction.
    IntActiQ9LDA7. 1 interaction.
    MINTiMINT-8390618.

    Structurei

    3D structure databases

    ProteinModelPortaliQ9LDA7.
    SMRiQ9LDA7. Positions 54-289.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini40 – 281242PP2C-likeAdd
    BLAST

    Sequence similaritiesi

    Belongs to the PP2C family.Curated
    Contains 1 PP2C-like domain.Curated

    Phylogenomic databases

    eggNOGiCOG0631.
    HOGENOMiHOG000233896.
    InParanoidiQ9LDA7.
    OMAiHLSHEIP.
    PhylomeDBiQ9LDA7.

    Family and domain databases

    Gene3Di3.60.40.10. 1 hit.
    InterProiIPR001932. PP2C-like_dom.
    IPR015655. Protein_Pase_2C.
    [Graphical view]
    PANTHERiPTHR13832. PTHR13832. 1 hit.
    PfamiPF00481. PP2C. 1 hit.
    [Graphical view]
    SMARTiSM00331. PP2C_SIG. 1 hit.
    SM00332. PP2Cc. 1 hit.
    [Graphical view]
    SUPFAMiSSF81606. SSF81606. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q9LDA7-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTGREILHKM KESVKEKVGL GASASSADSG KGKSKMLKQI THGFHLVKGK    50
    AFHEMEDYVV AKFKEVDDNE LGLFAIFDGH LSHEIPDYLC SHLFENILKE 100
    PNFWQEPEKA IKKAYYITDT TILDKADDLG KGGSTAVTAI LINCQKLVVA 150
    NVGDSRAVIC QNGVAKPLSV DHEPNMEKDE IENRGGFVSN FPGDVPRVDG 200
    QLAVARAFGD KSLKMHLSSE PYVTVEIIDD DAEFLILASD GLWKVMSNQE 250
    AVDSIKGIKD AKAAAKHLAE EAVARKSSDD ISVVVVKFQ 289
    Length:289
    Mass (Da):31,630
    Last modified:October 1, 2000 - v1
    Checksum:iD37C3DE3BF2F481B
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti55 – 551M → I in AAM53328. (PubMed:14593172)Curated

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP000413 Genomic DNA. Translation: BAB02155.1.
    CP002686 Genomic DNA. Translation: AEE75637.1.
    CP002686 Genomic DNA. Translation: AEE75638.1.
    AK117480 mRNA. Translation: BAC42144.1.
    AY120770 mRNA. Translation: AAM53328.1.
    BT008532 mRNA. Translation: AAP40359.1.
    RefSeqiNP_188144.1. NM_112389.3.
    NP_974318.1. NM_202589.1.
    UniGeneiAt.28162.
    At.64997.

    Genome annotation databases

    EnsemblPlantsiAT3G15260.1; AT3G15260.1; AT3G15260.
    AT3G15260.2; AT3G15260.2; AT3G15260.
    GeneIDi820757.
    KEGGiath:AT3G15260.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP000413 Genomic DNA. Translation: BAB02155.1 .
    CP002686 Genomic DNA. Translation: AEE75637.1 .
    CP002686 Genomic DNA. Translation: AEE75638.1 .
    AK117480 mRNA. Translation: BAC42144.1 .
    AY120770 mRNA. Translation: AAM53328.1 .
    BT008532 mRNA. Translation: AAP40359.1 .
    RefSeqi NP_188144.1. NM_112389.3.
    NP_974318.1. NM_202589.1.
    UniGenei At.28162.
    At.64997.

    3D structure databases

    ProteinModelPortali Q9LDA7.
    SMRi Q9LDA7. Positions 54-289.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 6091. 1 interaction.
    IntActi Q9LDA7. 1 interaction.
    MINTi MINT-8390618.

    Proteomic databases

    PaxDbi Q9LDA7.
    PRIDEi Q9LDA7.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi AT3G15260.1 ; AT3G15260.1 ; AT3G15260 .
    AT3G15260.2 ; AT3G15260.2 ; AT3G15260 .
    GeneIDi 820757.
    KEGGi ath:AT3G15260.

    Organism-specific databases

    TAIRi AT3G15260.

    Phylogenomic databases

    eggNOGi COG0631.
    HOGENOMi HOG000233896.
    InParanoidi Q9LDA7.
    OMAi HLSHEIP.
    PhylomeDBi Q9LDA7.

    Enzyme and pathway databases

    BioCyci ARA:AT3G15260-MONOMER.
    ARA:GQT-1952-MONOMER.

    Gene expression databases

    Genevestigatori Q9LDA7.

    Family and domain databases

    Gene3Di 3.60.40.10. 1 hit.
    InterProi IPR001932. PP2C-like_dom.
    IPR015655. Protein_Pase_2C.
    [Graphical view ]
    PANTHERi PTHR13832. PTHR13832. 1 hit.
    Pfami PF00481. PP2C. 1 hit.
    [Graphical view ]
    SMARTi SM00331. PP2C_SIG. 1 hit.
    SM00332. PP2Cc. 1 hit.
    [Graphical view ]
    SUPFAMi SSF81606. SSF81606. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC clones."
      Kaneko T., Katoh T., Sato S., Nakamura Y., Asamizu E., Tabata S.
      DNA Res. 7:217-221(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Columbia.
    2. The Arabidopsis Information Resource (TAIR)
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: GENOME REANNOTATION.
      Strain: cv. Columbia.
    3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Columbia.
    4. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
      Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
      , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
      Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Columbia.
    5. "Genome-wide and expression analysis of protein phosphatase 2C in rice and Arabidopsis."
      Xue T., Wang D., Zhang S., Ehlting J., Ni F., Jacab S., Zheng C., Zhong Y.
      BMC Genomics 9:550-550(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENE FAMILY, NOMENCLATURE.

    Entry informationi

    Entry nameiP2C39_ARATH
    AccessioniPrimary (citable) accession number: Q9LDA7
    Secondary accession number(s): Q8L834
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: April 14, 2009
    Last sequence update: October 1, 2000
    Last modified: October 1, 2014
    This is version 85 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Arabidopsis thaliana
      Arabidopsis thaliana: entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3