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Q9LD57

- PGKH1_ARATH

UniProt

Q9LD57 - PGKH1_ARATH

Protein

Phosphoglycerate kinase 1, chloroplastic

Gene

PGK1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 5 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 105 (01 Oct 2014)
      Sequence version 1 (01 Oct 2000)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    ATP + 3-phospho-D-glycerate = ADP + 3-phospho-D-glyceroyl phosphate.

    Pathwayi

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Binding sitei116 – 1161SubstrateBy similarity
    Binding sitei197 – 1971SubstrateBy similarity
    Binding sitei230 – 2301SubstrateBy similarity
    Binding sitei281 – 2811ATPBy similarity
    Binding sitei372 – 3721ATP; via carbonyl oxygenBy similarity
    Binding sitei403 – 4031ATPBy similarity

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Nucleotide bindingi432 – 4354ATPBy similarity

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. phosphoglycerate kinase activity Source: UniProtKB-EC

    GO - Biological processi

    1. glycolytic process Source: InterPro
    2. reductive pentose-phosphate cycle Source: UniProtKB-UniPathway
    3. response to cadmium ion Source: TAIR
    4. response to cold Source: TAIR

    Keywords - Molecular functioni

    Kinase, Transferase

    Keywords - Biological processi

    Calvin cycle

    Keywords - Ligandi

    ATP-binding, Nucleotide-binding

    Enzyme and pathway databases

    BioCyciARA:AT3G12780-MONOMER.
    UniPathwayiUPA00116.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Phosphoglycerate kinase 1, chloroplastic (EC:2.7.2.3)
    Gene namesi
    Name:PGK1
    Ordered Locus Names:At3g12780
    ORF Names:MBK21.15
    OrganismiArabidopsis thaliana (Mouse-ear cress)
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Chromosome 3

    Organism-specific databases

    TAIRiAT3G12780.

    Subcellular locationi

    Plastidchloroplast Curated

    GO - Cellular componenti

    1. apoplast Source: TAIR
    2. cell wall Source: TAIR
    3. chloroplast Source: TAIR
    4. chloroplast envelope Source: TAIR
    5. chloroplast stroma Source: TAIR
    6. cytoplasm Source: TAIR
    7. cytosol Source: TAIR
    8. membrane Source: TAIR
    9. mitochondrion Source: TAIR
    10. nucleus Source: TAIR
    11. stromule Source: TAIR
    12. thylakoid Source: TAIR

    Keywords - Cellular componenti

    Chloroplast, Plastid

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Transit peptidei1 – 7575ChloroplastSequence AnalysisAdd
    BLAST
    Chaini76 – 481406Phosphoglycerate kinase 1, chloroplasticPRO_0000407930Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Modified residuei81 – 811Phosphoserine1 Publication

    Keywords - PTMi

    Phosphoprotein

    Proteomic databases

    PaxDbiQ9LD57.
    PRIDEiQ9LD57.

    2D gel databases

    World-2DPAGE0003:Q9LD57.

    Expressioni

    Gene expression databases

    GenevestigatoriQ9LD57.

    Interactioni

    Subunit structurei

    Monomer.By similarity

    Protein-protein interaction databases

    BioGridi5795. 5 interactions.
    IntActiQ9LD57. 1 interaction.
    STRINGi3702.AT3G12780.1-P.

    Structurei

    3D structure databases

    ProteinModelPortaliQ9LD57.
    SMRiQ9LD57. Positions 77-475.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Region

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Regioni100 – 1023Substrate bindingBy similarity
    Regioni139 – 1424Substrate bindingBy similarity

    Sequence similaritiesi

    Belongs to the phosphoglycerate kinase family.Curated

    Keywords - Domaini

    Transit peptide

    Phylogenomic databases

    eggNOGiCOG0126.
    HOGENOMiHOG000227107.
    InParanoidiQ9LD57.
    KOiK00927.
    OMAiWEALDIG.
    PhylomeDBiQ9LD57.

    Family and domain databases

    Gene3Di3.40.50.1260. 1 hit.
    3.40.50.1270. 1 hit.
    HAMAPiMF_00145. Phosphoglyc_kinase.
    InterProiIPR001576. Phosphoglycerate_kinase.
    IPR015901. Phosphoglycerate_kinase_C.
    IPR015911. Phosphoglycerate_kinase_CS.
    IPR015824. Phosphoglycerate_kinase_N.
    [Graphical view]
    PANTHERiPTHR11406. PTHR11406. 1 hit.
    PfamiPF00162. PGK. 1 hit.
    [Graphical view]
    PIRSFiPIRSF000724. Pgk. 1 hit.
    PRINTSiPR00477. PHGLYCKINASE.
    SUPFAMiSSF53748. SSF53748. 1 hit.
    PROSITEiPS00111. PGLYCERATE_KINASE. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q9LD57-1 [UniParc]FASTAAdd to Basket

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    MASAAASSAF SLLKSTGAVA SSAGTRARAS LLPIPSTSVS ARPLGFSATL    50
    DSRRFSLHVA SKVESVRGKG SRGVVSMAKK SVGDLTSADL KGKKVFVRAD 100
    LNVPLDDNQT ITDDTRIRAA IPTIKYLIEN GAKVILSTHL GRPKGVTPKF 150
    SLAPLVPRLS ELLGIEVTKA DDCIGPEVES LVASLPEGGV LLLENVRFYK 200
    EEEKNDPEFA KKLASLADLY VNDAFGTAHR AHASTEGVTK FLKPSVAGFL 250
    LQKELDYLVG AVSNPKRPFA AIVGGSKVSS KIGVIESLLE KCDILLLGGG 300
    MIFTFYKAQG LSVGSSLVEE DKLELATELL AKAKAKGVSL LLPTDVVVAD 350
    KFAPDANSKI VPASGIEDGW MGLDIGPDSI KTFNEALDTT QTVIWNGPMG 400
    VFEMEKFAAG TEAIANKLAE LSEKGVTTII GGGDSVAAVE KVGVAGVMSH 450
    ISTGGGASLE LLEGKVLPGV IALDEAIPVT V 481
    Length:481
    Mass (Da):50,112
    Last modified:October 1, 2000 - v1
    Checksum:iF27EE9BF7F2062EF
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AF247558 mRNA. Translation: AAF70258.1.
    AB024033 Genomic DNA. Translation: BAB02423.1.
    CP002686 Genomic DNA. Translation: AEE75246.1.
    AF360234 mRNA. Translation: AAK25944.1.
    AF428418 mRNA. Translation: AAL16186.1.
    AY045623 mRNA. Translation: AAK73981.1.
    AY059841 mRNA. Translation: AAL24323.1.
    AY062953 mRNA. Translation: AAL33785.1.
    AY093998 mRNA. Translation: AAM16259.1.
    AY114638 mRNA. Translation: AAM47957.1.
    AY126991 mRNA. Translation: AAM83218.1.
    AK227225 mRNA. Translation: BAE99262.1.
    AK316922 mRNA. Translation: BAH19627.1.
    U37701 mRNA. Translation: AAB60303.1.
    PIRiS71368.
    RefSeqiNP_187884.1. NM_112114.3.
    UniGeneiAt.20378.
    At.53281.

    Genome annotation databases

    EnsemblPlantsiAT3G12780.1; AT3G12780.1; AT3G12780.
    GeneIDi820461.
    KEGGiath:AT3G12780.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AF247558 mRNA. Translation: AAF70258.1 .
    AB024033 Genomic DNA. Translation: BAB02423.1 .
    CP002686 Genomic DNA. Translation: AEE75246.1 .
    AF360234 mRNA. Translation: AAK25944.1 .
    AF428418 mRNA. Translation: AAL16186.1 .
    AY045623 mRNA. Translation: AAK73981.1 .
    AY059841 mRNA. Translation: AAL24323.1 .
    AY062953 mRNA. Translation: AAL33785.1 .
    AY093998 mRNA. Translation: AAM16259.1 .
    AY114638 mRNA. Translation: AAM47957.1 .
    AY126991 mRNA. Translation: AAM83218.1 .
    AK227225 mRNA. Translation: BAE99262.1 .
    AK316922 mRNA. Translation: BAH19627.1 .
    U37701 mRNA. Translation: AAB60303.1 .
    PIRi S71368.
    RefSeqi NP_187884.1. NM_112114.3.
    UniGenei At.20378.
    At.53281.

    3D structure databases

    ProteinModelPortali Q9LD57.
    SMRi Q9LD57. Positions 77-475.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 5795. 5 interactions.
    IntActi Q9LD57. 1 interaction.
    STRINGi 3702.AT3G12780.1-P.

    2D gel databases

    World-2DPAGE 0003:Q9LD57.

    Proteomic databases

    PaxDbi Q9LD57.
    PRIDEi Q9LD57.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi AT3G12780.1 ; AT3G12780.1 ; AT3G12780 .
    GeneIDi 820461.
    KEGGi ath:AT3G12780.

    Organism-specific databases

    TAIRi AT3G12780.

    Phylogenomic databases

    eggNOGi COG0126.
    HOGENOMi HOG000227107.
    InParanoidi Q9LD57.
    KOi K00927.
    OMAi WEALDIG.
    PhylomeDBi Q9LD57.

    Enzyme and pathway databases

    UniPathwayi UPA00116 .
    BioCyci ARA:AT3G12780-MONOMER.

    Gene expression databases

    Genevestigatori Q9LD57.

    Family and domain databases

    Gene3Di 3.40.50.1260. 1 hit.
    3.40.50.1270. 1 hit.
    HAMAPi MF_00145. Phosphoglyc_kinase.
    InterProi IPR001576. Phosphoglycerate_kinase.
    IPR015901. Phosphoglycerate_kinase_C.
    IPR015911. Phosphoglycerate_kinase_CS.
    IPR015824. Phosphoglycerate_kinase_N.
    [Graphical view ]
    PANTHERi PTHR11406. PTHR11406. 1 hit.
    Pfami PF00162. PGK. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF000724. Pgk. 1 hit.
    PRINTSi PR00477. PHGLYCKINASE.
    SUPFAMi SSF53748. SSF53748. 1 hit.
    PROSITEi PS00111. PGLYCERATE_KINASE. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Structure and regulation of nuclear genes encoding chloroplast and cytosolic phosphoglycerate kinase in Arabidopsis thaliana."
      Shih M.-C.
      Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    2. "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence features of the regions of 4,504,864 bp covered by sixty P1 and TAC clones."
      Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.
      DNA Res. 7:131-135(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Columbia.
    3. The Arabidopsis Information Resource (TAIR)
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: GENOME REANNOTATION.
      Strain: cv. Columbia.
    4. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
      Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
      , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
      Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Columbia.
    5. "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."
      Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.
      , Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.
      Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Columbia.
    6. "Analysis of multiple occurrences of alternative splicing events in Arabidopsis thaliana using novel sequenced full-length cDNAs."
      Iida K., Fukami-Kobayashi K., Toyoda A., Sakaki Y., Kobayashi M., Seki M., Shinozaki K.
      DNA Res. 16:155-164(2009) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Columbia.
      Tissue: Rosette leaf.
    7. "Two phosphoglycerate kinase cDNAs from Arabidopsis thaliana."
      Loebler M.
      DNA Seq. 8:247-252(1998) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 83-481.
      Strain: cv. Columbia.
      Tissue: Leaf.
    8. "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks."
      Reiland S., Messerli G., Baerenfaller K., Gerrits B., Endler A., Grossmann J., Gruissem W., Baginsky S.
      Plant Physiol. 150:889-903(2009) [PubMed] [Europe PMC] [Abstract]
      Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-81, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].

    Entry informationi

    Entry nameiPGKH1_ARATH
    AccessioniPrimary (citable) accession number: Q9LD57
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 3, 2011
    Last sequence update: October 1, 2000
    Last modified: October 1, 2014
    This is version 105 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Arabidopsis thaliana
      Arabidopsis thaliana: entries and gene names
    2. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3