Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

Q9LD57

- PGKH1_ARATH

UniProt

Q9LD57 - PGKH1_ARATH

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein

Phosphoglycerate kinase 1, chloroplastic

Gene

PGK1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 5 out of 5- Experimental evidence at protein leveli

Functioni

Catalytic activityi

ATP + 3-phospho-D-glycerate = ADP + 3-phospho-D-glyceroyl phosphate.

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei116 – 1161SubstrateBy similarity
Binding sitei197 – 1971SubstrateBy similarity
Binding sitei230 – 2301SubstrateBy similarity
Binding sitei281 – 2811ATPBy similarity
Binding sitei372 – 3721ATP; via carbonyl oxygenBy similarity
Binding sitei403 – 4031ATPBy similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi432 – 4354ATPBy similarity

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. phosphoglycerate kinase activity Source: UniProtKB-EC

GO - Biological processi

  1. glycolytic process Source: InterPro
  2. reductive pentose-phosphate cycle Source: UniProtKB-UniPathway
  3. response to cadmium ion Source: TAIR
  4. response to cold Source: TAIR
Complete GO annotation...

Keywords - Molecular functioni

Kinase, Transferase

Keywords - Biological processi

Calvin cycle

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciARA:AT3G12780-MONOMER.
UniPathwayiUPA00116.

Names & Taxonomyi

Protein namesi
Recommended name:
Phosphoglycerate kinase 1, chloroplastic (EC:2.7.2.3)
Gene namesi
Name:PGK1
Ordered Locus Names:At3g12780
ORF Names:MBK21.15
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548: Chromosome 3

Organism-specific databases

TAIRiAT3G12780.

Subcellular locationi

Plastidchloroplast Curated

GO - Cellular componenti

  1. apoplast Source: TAIR
  2. cell wall Source: TAIR
  3. chloroplast Source: TAIR
  4. chloroplast envelope Source: TAIR
  5. chloroplast stroma Source: TAIR
  6. cytoplasm Source: TAIR
  7. cytosol Source: TAIR
  8. membrane Source: TAIR
  9. mitochondrion Source: TAIR
  10. nucleus Source: TAIR
  11. stromule Source: TAIR
  12. thylakoid Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Chloroplast, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transit peptidei1 – 7575ChloroplastSequence AnalysisAdd
BLAST
Chaini76 – 481406Phosphoglycerate kinase 1, chloroplasticPRO_0000407930Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei81 – 811Phosphoserine1 Publication

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDbiQ9LD57.
PRIDEiQ9LD57.

2D gel databases

World-2DPAGE0003:Q9LD57.

Expressioni

Gene expression databases

GenevestigatoriQ9LD57.

Interactioni

Subunit structurei

Monomer.By similarity

Protein-protein interaction databases

BioGridi5795. 5 interactions.
IntActiQ9LD57. 1 interaction.
STRINGi3702.AT3G12780.1-P.

Structurei

3D structure databases

ProteinModelPortaliQ9LD57.
SMRiQ9LD57. Positions 77-475.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni100 – 1023Substrate bindingBy similarity
Regioni139 – 1424Substrate bindingBy similarity

Sequence similaritiesi

Belongs to the phosphoglycerate kinase family.Curated

Keywords - Domaini

Transit peptide

Phylogenomic databases

eggNOGiCOG0126.
HOGENOMiHOG000227107.
InParanoidiQ9LD57.
KOiK00927.
OMAiWEALDIG.
PhylomeDBiQ9LD57.

Family and domain databases

Gene3Di3.40.50.1260. 1 hit.
3.40.50.1270. 1 hit.
HAMAPiMF_00145. Phosphoglyc_kinase.
InterProiIPR001576. Phosphoglycerate_kinase.
IPR015901. Phosphoglycerate_kinase_C.
IPR015911. Phosphoglycerate_kinase_CS.
IPR015824. Phosphoglycerate_kinase_N.
[Graphical view]
PANTHERiPTHR11406. PTHR11406. 1 hit.
PfamiPF00162. PGK. 1 hit.
[Graphical view]
PIRSFiPIRSF000724. Pgk. 1 hit.
PRINTSiPR00477. PHGLYCKINASE.
SUPFAMiSSF53748. SSF53748. 1 hit.
PROSITEiPS00111. PGLYCERATE_KINASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9LD57-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MASAAASSAF SLLKSTGAVA SSAGTRARAS LLPIPSTSVS ARPLGFSATL
60 70 80 90 100
DSRRFSLHVA SKVESVRGKG SRGVVSMAKK SVGDLTSADL KGKKVFVRAD
110 120 130 140 150
LNVPLDDNQT ITDDTRIRAA IPTIKYLIEN GAKVILSTHL GRPKGVTPKF
160 170 180 190 200
SLAPLVPRLS ELLGIEVTKA DDCIGPEVES LVASLPEGGV LLLENVRFYK
210 220 230 240 250
EEEKNDPEFA KKLASLADLY VNDAFGTAHR AHASTEGVTK FLKPSVAGFL
260 270 280 290 300
LQKELDYLVG AVSNPKRPFA AIVGGSKVSS KIGVIESLLE KCDILLLGGG
310 320 330 340 350
MIFTFYKAQG LSVGSSLVEE DKLELATELL AKAKAKGVSL LLPTDVVVAD
360 370 380 390 400
KFAPDANSKI VPASGIEDGW MGLDIGPDSI KTFNEALDTT QTVIWNGPMG
410 420 430 440 450
VFEMEKFAAG TEAIANKLAE LSEKGVTTII GGGDSVAAVE KVGVAGVMSH
460 470 480
ISTGGGASLE LLEGKVLPGV IALDEAIPVT V
Length:481
Mass (Da):50,112
Last modified:October 1, 2000 - v1
Checksum:iF27EE9BF7F2062EF
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF247558 mRNA. Translation: AAF70258.1.
AB024033 Genomic DNA. Translation: BAB02423.1.
CP002686 Genomic DNA. Translation: AEE75246.1.
AF360234 mRNA. Translation: AAK25944.1.
AF428418 mRNA. Translation: AAL16186.1.
AY045623 mRNA. Translation: AAK73981.1.
AY059841 mRNA. Translation: AAL24323.1.
AY062953 mRNA. Translation: AAL33785.1.
AY093998 mRNA. Translation: AAM16259.1.
AY114638 mRNA. Translation: AAM47957.1.
AY126991 mRNA. Translation: AAM83218.1.
AK227225 mRNA. Translation: BAE99262.1.
AK316922 mRNA. Translation: BAH19627.1.
U37701 mRNA. Translation: AAB60303.1.
PIRiS71368.
RefSeqiNP_187884.1. NM_112114.3.
UniGeneiAt.20378.
At.53281.

Genome annotation databases

EnsemblPlantsiAT3G12780.1; AT3G12780.1; AT3G12780.
GeneIDi820461.
KEGGiath:AT3G12780.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF247558 mRNA. Translation: AAF70258.1 .
AB024033 Genomic DNA. Translation: BAB02423.1 .
CP002686 Genomic DNA. Translation: AEE75246.1 .
AF360234 mRNA. Translation: AAK25944.1 .
AF428418 mRNA. Translation: AAL16186.1 .
AY045623 mRNA. Translation: AAK73981.1 .
AY059841 mRNA. Translation: AAL24323.1 .
AY062953 mRNA. Translation: AAL33785.1 .
AY093998 mRNA. Translation: AAM16259.1 .
AY114638 mRNA. Translation: AAM47957.1 .
AY126991 mRNA. Translation: AAM83218.1 .
AK227225 mRNA. Translation: BAE99262.1 .
AK316922 mRNA. Translation: BAH19627.1 .
U37701 mRNA. Translation: AAB60303.1 .
PIRi S71368.
RefSeqi NP_187884.1. NM_112114.3.
UniGenei At.20378.
At.53281.

3D structure databases

ProteinModelPortali Q9LD57.
SMRi Q9LD57. Positions 77-475.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 5795. 5 interactions.
IntActi Q9LD57. 1 interaction.
STRINGi 3702.AT3G12780.1-P.

2D gel databases

World-2DPAGE 0003:Q9LD57.

Proteomic databases

PaxDbi Q9LD57.
PRIDEi Q9LD57.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi AT3G12780.1 ; AT3G12780.1 ; AT3G12780 .
GeneIDi 820461.
KEGGi ath:AT3G12780.

Organism-specific databases

TAIRi AT3G12780.

Phylogenomic databases

eggNOGi COG0126.
HOGENOMi HOG000227107.
InParanoidi Q9LD57.
KOi K00927.
OMAi WEALDIG.
PhylomeDBi Q9LD57.

Enzyme and pathway databases

UniPathwayi UPA00116 .
BioCyci ARA:AT3G12780-MONOMER.

Gene expression databases

Genevestigatori Q9LD57.

Family and domain databases

Gene3Di 3.40.50.1260. 1 hit.
3.40.50.1270. 1 hit.
HAMAPi MF_00145. Phosphoglyc_kinase.
InterProi IPR001576. Phosphoglycerate_kinase.
IPR015901. Phosphoglycerate_kinase_C.
IPR015911. Phosphoglycerate_kinase_CS.
IPR015824. Phosphoglycerate_kinase_N.
[Graphical view ]
PANTHERi PTHR11406. PTHR11406. 1 hit.
Pfami PF00162. PGK. 1 hit.
[Graphical view ]
PIRSFi PIRSF000724. Pgk. 1 hit.
PRINTSi PR00477. PHGLYCKINASE.
SUPFAMi SSF53748. SSF53748. 1 hit.
PROSITEi PS00111. PGLYCERATE_KINASE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Structure and regulation of nuclear genes encoding chloroplast and cytosolic phosphoglycerate kinase in Arabidopsis thaliana."
    Shih M.-C.
    Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
  2. "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence features of the regions of 4,504,864 bp covered by sixty P1 and TAC clones."
    Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.
    DNA Res. 7:131-135(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  3. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  4. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  5. "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."
    Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.
    , Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.
    Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  6. "Analysis of multiple occurrences of alternative splicing events in Arabidopsis thaliana using novel sequenced full-length cDNAs."
    Iida K., Fukami-Kobayashi K., Toyoda A., Sakaki Y., Kobayashi M., Seki M., Shinozaki K.
    DNA Res. 16:155-164(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
    Tissue: Rosette leaf.
  7. "Two phosphoglycerate kinase cDNAs from Arabidopsis thaliana."
    Loebler M.
    DNA Seq. 8:247-252(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 83-481.
    Strain: cv. Columbia.
    Tissue: Leaf.
  8. "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks."
    Reiland S., Messerli G., Baerenfaller K., Gerrits B., Endler A., Grossmann J., Gruissem W., Baginsky S.
    Plant Physiol. 150:889-903(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-81, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiPGKH1_ARATH
AccessioniPrimary (citable) accession number: Q9LD57
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 3, 2011
Last sequence update: October 1, 2000
Last modified: October 1, 2014
This is version 105 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3