Glucodextranase precursor - Arthrobacter globiformis

Preferred order of sections

Names and origin

Protein names

Submitted name:
Glucodextranase EMBL BAB20416.1

Gene names

Name:

g1d EMBL BAB20416.1

Organism

Arthrobacter globiformis EMBL BAB20416.1

Taxonomic identifier

1665 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micrococcineae › Micrococcaceae › Arthrobacter

Protein attributes

Sequence length	1048 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Evidence at protein level

Ontologies

Keywords
Domain	Signal EMBL BAB20416.1
Ligand	Calcium PDB 1UG9 PDB 1ULV Metal-binding PDB 1UG9 PDB 1ULV
Technical term	3D-structure PDB 1UG9 PDB 1ULV
Gene Ontology (GO)
Biological process	carbohydrate catabolic process Inferred from electronic annotation. Source: InterPro polysaccharide metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	carbohydrate binding Inferred from electronic annotation. Source: InterPro glucan 1,4-alpha-glucosidase activity Inferred from electronic annotation. Source: InterPro metal ion binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Signal peptide

1 – 28

28

Potential EMBL BAB20416.1

Chain

29 – 1048

1020

Potential EMBL BAB20416.1

PRO_5000049468

Sites

Metal binding

164

1

Calcium PDB 1UG9 PDB 1ULV

Metal binding

165

1

Calcium; via carbonyl oxygen PDB 1UG9 PDB 1ULV

Metal binding

167

1

Calcium; via carbonyl oxygen PDB 1UG9 PDB 1ULV

Metal binding

170

1

Calcium PDB 1UG9 PDB 1ULV

Metal binding

172

1

Calcium; via carbonyl oxygen PDB 1UG9 PDB 1ULV

Metal binding

174

1

Calcium PDB 1UG9 PDB 1ULV

Metal binding

187

1

Calcium PDB 1UG9 PDB 1ULV

Metal binding

239

1

Calcium PDB 1UG9 PDB 1ULV

Metal binding

240

1

Calcium; via carbonyl oxygen PDB 1UG9 PDB 1ULV

Metal binding

386

1

Calcium; via carbonyl oxygen PDB 1UG9 PDB 1ULV

Metal binding

390

1

Calcium PDB 1UG9 PDB 1ULV

Metal binding

437

1

Calcium PDB 1UG9 PDB 1ULV

Metal binding

810

1

Calcium PDB 1UG9 PDB 1ULV

Metal binding

811

1

Calcium; via carbonyl oxygen PDB 1UG9 PDB 1ULV

Metal binding

814

1

Calcium PDB 1UG9 PDB 1ULV

Metal binding

835

1

Calcium PDB 1UG9 PDB 1ULV

Metal binding

836

1

Calcium; via carbonyl oxygen PDB 1UG9 PDB 1ULV

Metal binding

974

1

Calcium; via carbonyl oxygen PDB 1UG9 PDB 1ULV

Metal binding

997

1

Calcium; via carbonyl oxygen PDB 1UG9 PDB 1ULV

Metal binding

1008

1

Calcium PDB 1UG9 PDB 1ULV

Metal binding

1010

1

Calcium; via carbonyl oxygen PDB 1UG9 PDB 1ULV

Metal binding

1013

1

Calcium PDB 1UG9 PDB 1ULV

Metal binding

1018

1

Calcium PDB 1UG9 PDB 1ULV

Metal binding

1019

1

Calcium; via carbonyl oxygen PDB 1UG9 PDB 1ULV

Metal binding

1027

1

Calcium PDB 1UG9 PDB 1ULV

Sequences

Sequence

Length

Mass (Da)

Tools

Q9LBQ9 [UniParc].

Last modified October 1, 2000. Version 1.
Checksum: 09D4D124B478DF4F
Show »

FASTA

1,048

109,141

        10         20         30         40         50         60 
MKQRLKSACS ATALAVAVSA LGLSPAVAET AEPPGSPGAA ATWTKGDKEG VGTSLNPASK 

        70         80         90        100        110        120 
VWYTLTEGTM SEVYYPHADT PNTRELQFAV SDGTSAQRES EQTTRTVELA DPKALSYRQT 

       130        140        150        160        170        180 
TTDNAGRWRL TKTYVTDPRR STVMLGVTFE VLDGGDYQLF VLSDPSLAGT SGGDTGSVTD 

       190        200        210        220        230        240 
GALLASDLAD AATPVATALV SSVGFGAVAN GYVGTSDGWT DLAADGRLDN ASATAGPGNI 

       250        260        270        280        290        300 
SQTGQIPLAA GGKTEFSLAL GFGADTAEAL ATAKASLGTG YKKVSKSYTG EWKKYLNSLD 

       310        320        330        340        350        360 
APATSLTGAL RTQYDVSLMT VKSHEDKTFP GAFIASLTIP WGQAASAETH REGYHAVWAR 

       370        380        390        400        410        420 
DMYQSVTALL AAGDEEAAAR GVEWLFTYQQ QPDGHFPQTS RVDGTIGQNG IQLDETAFPI 

       430        440        450        460        470        480 
LLANQIGRTD AGFYRNELKP AADYLVAAGP KTPQERWEET GGYSTSTLAS QIAALAAAAD 

       490        500        510        520        530        540 
IAGKNGDAGS AAVYRATADE WQRSTEKWMF TTNGPVGDGK YYLRISATGN PNDGATRDWG 

       550        560        570        580        590        600 
NGAGVHPENA VLDGGFLEFV RLGVKAPADP YVADSLAETD ASISQETPGG RMWHRYTYDG 

       610        620        630        640        650        660 
YGEKADGSPW DGTGIGRLWP LLSGERGEYA LANGQDALPY LETMHSAANA GYMIPEQVWD 

       670        680        690        700        710        720 
RDEPTSYGHE LGRSTGSASP LSWAMAQYVR LAAGVKAGAP VETPQNVAAR YAAGTPLSSP 

       730        740        750        760        770        780 
ELSVTAPEAL STADSATAVV RGTTNAAKVY VSVNGTATEA PVTDGTFSLD VALTGAKNKV 

       790        800        810        820        830        840 
TVAAVAADGG TAVEDRTVLY YGSRIGALSD PAGDDNGPGT YRYPTNSAYV PGAFDLTGVD 

       850        860        870        880        890        900 
VYDAGDDYAF VATIAGEVTN PWGGQAISHQ RVNIYLGKGE GGATPGLPGT NINLEHAWDS 

       910        920        930        940        950        960 
VIVTDGRFDG AGVYAPDGTR TSAVSLLAVP EARQIVTRVP KAALGGLDPA TARMSVAMFG 

       970        980        990       1000       1010       1020 
NAESGEGIGN VRPVYDGAYW EAGDPAWIKE WRFGGGAGVF DGTIPSRDTD TDDPNALDVL 

      1030       1040 
VGEGQTQAAV LDWRAGSPVV VPMLGLQP

« Hide

References

[1]

"Structural insights into substrate specificity and function of glucodextranase."
Mizuno M., Tonozuka T., Suzuki S., Uotsu-Tomita R., Kamitori S., Nishikawa A., Sakano Y.
J. Biol. Chem. 279:10575-10583(2004) [PubMed: 14660574] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: I42 EMBL BAB20416.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AB033333 Genomic DNA. Translation: BAB20416.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1UG9	X-ray	2.50	A	29-1048	[»]
1ULV	X-ray	2.42	A	29-1048	[»]

ProteinModelPortal

Q9LBQ9.

SMR

Q9LBQ9. Positions 30-1048.

ModBase

Search...

Protein family/group databases

CAZy

GH15. Glycoside Hydrolase Family 15.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Enzyme and pathway databases

BRENDA

3.2.1.70. 1012.

Family and domain databases

InterPro

IPR008928. 6-hairpin_glycosidase-like.
IPR012341. 6hp_glycosidase.
IPR008960. Carb-bd_dom_fam9-like.
IPR015922. Carb-bd_dom_fam9-like_subgr.
IPR019248. DUF2223.
IPR000165. Glucoamylase.
IPR006425. Glucoamylase_bac.
IPR015219. Glucodextran_B.
IPR015220. Glucodextran_N.
IPR011013. Glyco_hydro-type_carb-bd.
IPR014718. Glyco_hydro-type_carb-bd_sub.
IPR011613. Glyco_hydro_15.
IPR014756. Ig_E-set.
[Graphical view]

Gene3D

G3DSA:2.60.40.1190. CBD9. 1 hit.
G3DSA:1.50.10.10. CelA/Cel48F_cat. 1 hit.
G3DSA:2.70.98.10. Glyco_hydro_42_D5. 1 hit.

Pfam

PF09985. DUF2223. 1 hit.
PF09136. Glucodextran_B. 1 hit.
PF09137. Glucodextran_N. 1 hit.
PF00723. Glyco_hydro_15. 1 hit.
[Graphical view]

SUPFAM

SSF49344. CBD9-like. 1 hit.
SSF74650. Gal_mut_like. 1 hit.
SSF48208. Glyco_trans_6hp. 1 hit.
SSF81296. Ig_E-set. 1 hit.

TIGRFAMs

TIGR01535. Glucan_glucosid. 1 hit.

PROSITE

PS00820. GLUCOAMYLASE. 1 hit.
[Graphical view]

ProtoNet

Search...

Entry information

Entry name

Q9LBQ9_ARTGO

Accession

Primary (citable) accession number: Q9LBQ9

Entry history

Integrated into UniProtKB/TrEMBL:	October 1, 2000
Last sequence update:	October 1, 2000
Last modified:	January 25, 2012
This is version 51 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)