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Protein
Submitted name:

Sigma-54-dependent transcriptional activator

Gene

prdR

Organism
Clostridium sticklandii
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotationSAAS annotation

Keywords - Ligandi

ATP-bindingUniRule annotationSAAS annotation, DNA-bindingSAAS annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Submitted name:
Sigma-54-dependent transcriptional activatorImported
Gene namesi
Name:prdRImported
OrganismiClostridium sticklandiiImported
Taxonomic identifieri1511 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesPeptostreptococcaceaePeptoclostridium

Interactioni

Protein-protein interaction databases

STRINGi499177.CLOST_2237.

Structurei

3D structure databases

ProteinModelPortaliQ9L4Q6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini15 – 7157CBSInterPro annotationAdd
BLAST
Domaini77 – 13761CBSInterPro annotationAdd
BLAST
Domaini134 – 18552PAS (PER-ARNT-SIM)InterPro annotationAdd
BLAST
Domaini273 – 502230Sigma-54 factor interactionInterPro annotationAdd
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili239 – 26628Sequence analysisAdd
BLAST

Sequence similaritiesi

Contains 1 sigma-54 factor interaction domain.UniRule annotation

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiENOG4108JUB. Bacteria.
COG3829. LUCA.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
3.40.50.300. 1 hit.
InterProiIPR003593. AAA+_ATPase.
IPR000644. CBS_dom.
IPR009057. Homeodomain-like.
IPR002197. HTH_Fis.
IPR027417. P-loop_NTPase.
IPR000014. PAS.
IPR002078. Sigma_54_int.
IPR025662. Sigma_54_int_dom_ATP-bd_1.
IPR025943. Sigma_54_int_dom_ATP-bd_2.
IPR025944. Sigma_54_int_dom_CS.
[Graphical view]
PfamiPF00571. CBS. 2 hits.
PF02954. HTH_8. 1 hit.
PF13426. PAS_9. 1 hit.
PF00158. Sigma54_activat. 1 hit.
[Graphical view]
PRINTSiPR01590. HTHFIS.
SMARTiSM00382. AAA. 1 hit.
SM00116. CBS. 2 hits.
SM00091. PAS. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF52540. SSF52540. 1 hit.
SSF55785. SSF55785. 1 hit.
TIGRFAMsiTIGR00229. sensory_box. 1 hit.
PROSITEiPS51371. CBS. 2 hits.
PS50112. PAS. 1 hit.
PS00675. SIGMA54_INTERACT_1. 1 hit.
PS00676. SIGMA54_INTERACT_2. 1 hit.
PS00688. SIGMA54_INTERACT_3. 1 hit.
PS50045. SIGMA54_INTERACT_4. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9L4Q6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFFNQTKRLK VKEIMSKDFI VFDSDISLRR CVEHIALNNL KEVIVRHHEK
60 70 80 90 100
LTGYIKFDDI IKISLSQSFS EKKLFDIRAN KPFYLNVEDT VLMAKDIMRE
110 120 130 140 150
NQVDRVFVLD DEKLVGVLRT QDIVYKLYPK IQANEDLYEL LWDNVHEGIC
160 170 180 190 200
IIDNKGMVCI WGRGSEKLYG IKKSEIIGKK LEEFFPTALL LDVLKSKEPV
210 220 230 240 250
ENIIHSPRKN TYVNISALPL IKNGKLIGVV STERDVSEIT NLSRELEFTK
260 270 280 290 300
EKLDYLQVEV RKMNEDKFSF GNIVGKSKIM THTIDRAYQV ASTTSSVLIS
310 320 330 340 350
GESGTGKEVF ARAIHQSSGR EGAFVAINCS AIPESLFESE MFGYESGAFT
360 370 380 390 400
GALSKGKIGK IEIANGGTLF LDEIGDMPLH MQAKLLRVLQ ERQLMRVGGD
410 420 430 440 450
KSISLDVRVI SATHRNLEDM VKSGTFREDL YYRLNVVNIK LPSLSDRIED
460 470 480 490 500
VPLFVKLFIE EFCRENHMKV PNISPEILNM LMNYSWPGNI RELKNMVEHL
510 520 530 540 550
VVFSKNNEIQ IDTLPEYINN KEDKTINIKN EKSLTDLIRK TEIKAIHDAM
560 570 580
KECGNNKQQA AKLLDIPRST LYYKIKFYDL NQYL
Length:584
Mass (Da):67,033
Last modified:October 1, 2000 - v1
Checksum:iEF1F80779877F721
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ130879 Genomic DNA. Translation: CAB71309.1.
RefSeqiWP_013362446.1. NC_014614.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ130879 Genomic DNA. Translation: CAB71309.1.
RefSeqiWP_013362446.1. NC_014614.1.

3D structure databases

ProteinModelPortaliQ9L4Q6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi499177.CLOST_2237.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiENOG4108JUB. Bacteria.
COG3829. LUCA.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
3.40.50.300. 1 hit.
InterProiIPR003593. AAA+_ATPase.
IPR000644. CBS_dom.
IPR009057. Homeodomain-like.
IPR002197. HTH_Fis.
IPR027417. P-loop_NTPase.
IPR000014. PAS.
IPR002078. Sigma_54_int.
IPR025662. Sigma_54_int_dom_ATP-bd_1.
IPR025943. Sigma_54_int_dom_ATP-bd_2.
IPR025944. Sigma_54_int_dom_CS.
[Graphical view]
PfamiPF00571. CBS. 2 hits.
PF02954. HTH_8. 1 hit.
PF13426. PAS_9. 1 hit.
PF00158. Sigma54_activat. 1 hit.
[Graphical view]
PRINTSiPR01590. HTHFIS.
SMARTiSM00382. AAA. 1 hit.
SM00116. CBS. 2 hits.
SM00091. PAS. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF52540. SSF52540. 1 hit.
SSF55785. SSF55785. 1 hit.
TIGRFAMsiTIGR00229. sensory_box. 1 hit.
PROSITEiPS51371. CBS. 2 hits.
PS50112. PAS. 1 hit.
PS00675. SIGMA54_INTERACT_1. 1 hit.
PS00676. SIGMA54_INTERACT_2. 1 hit.
PS00688. SIGMA54_INTERACT_3. 1 hit.
PS50045. SIGMA54_INTERACT_4. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ9L4Q6_CLOST
AccessioniPrimary (citable) accession number: Q9L4Q6
Entry historyi
Integrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: October 1, 2000
Last modified: September 7, 2016
This is version 94 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.