Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Transcriptional regulator with MHYT and LytTR domains

Gene

coxC

Organism
Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW

GO - Biological processi

  1. regulation of transcription, DNA-templated Source: UniProtKB-KW
  2. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationSAAS annotation

Keywords - Ligandi

DNA-bindingSAAS annotation

Enzyme and pathway databases

BioCyciOCAR504832:GJPZ-3595-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Transcriptional regulator with MHYT and LytTR domainsImported
Gene namesi
Name:coxCImported
Ordered Locus Names:OCA5_pHCG300280Imported
Encoded oniPlasmid pHCG3Imported
OrganismiOligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5)Imported
Taxonomic identifieri504832 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeOligotropha
ProteomesiUP000007730 Componenti: Plasmid pHCG3

Family & Domainsi

Sequence similaritiesi

Contains HTH LytTR-type DNA-binding domain.SAAS annotation

Phylogenomic databases

OMAiRERMCPW.

Family and domain databases

InterProiIPR007492. LytTR_DNA-bd_dom.
IPR012073. LytTR_MHYT.
IPR005330. MHYT.
[Graphical view]
PfamiPF04397. LytTR. 1 hit.
PF03707. MHYT. 3 hits.
[Graphical view]
PIRSFiPIRSF036615. MHYT_LytTR. 1 hit.
SMARTiSM00850. LytTR. 1 hit.
[Graphical view]
PROSITEiPS50930. HTH_LYTTR. 1 hit.
PS50924. MHYT. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9KX27-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPITHDPMLV ALSLLVAIQA SYVGLNLSLR VSQAFALHRR LLIAGAALSF
60 70 80 90 100
AVGIWAMHFV GMLAARLPVT VDYVVLPTLL SLLVCVLVVG IAVYLATQRS
110 120 130 140 150
QRLLFVAATV MGVGIISMHY IGMMALHASA HMTHDPLYVI ASVLIAILAS
160 170 180 190 200
GWALWLAFAS ETRPSLFVCA TVLGCAIAGM HYTAMAGLTL HPIAGVPPSA
210 220 230 240 250
VPAISSGLLA LIVSVVAFLV SGFFMLALVP DQTEYPADAL ILPESSASTP
260 270 280 290 300
VSEAVALGEP ILAVAPAAES AITPGELTRT PSARIYESTL PVEKYHGSKV
310 320 330 340 350
INTADIFSVH ANAHYTYVFN GREDIFCPLS IGEIIERLPP DTFFRVHRSY
360 370 380 390 400
IINIHCVARL KRAGDNGIAE LDSPVRRSVP VSRSRLPQLR EQLAAYLGTK

GS
Length:402
Mass (Da):42,864
Last modified:September 30, 2000 - v1
Checksum:i4C6108F085CA133D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002827 Genomic DNA. Translation: AEI08103.1.
RefSeqiWP_013913727.1. NC_015689.1.
YP_004638430.1. NC_015689.1.

Genome annotation databases

EnsemblBacteriaiAEI08103; AEI08103; OCA5_pHCG300280.
KEGGiocg:OCA5_pHCG300280.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002827 Genomic DNA. Translation: AEI08103.1.
RefSeqiWP_013913727.1. NC_015689.1.
YP_004638430.1. NC_015689.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEI08103; AEI08103; OCA5_pHCG300280.
KEGGiocg:OCA5_pHCG300280.

Phylogenomic databases

OMAiRERMCPW.

Enzyme and pathway databases

BioCyciOCAR504832:GJPZ-3595-MONOMER.

Family and domain databases

InterProiIPR007492. LytTR_DNA-bd_dom.
IPR012073. LytTR_MHYT.
IPR005330. MHYT.
[Graphical view]
PfamiPF04397. LytTR. 1 hit.
PF03707. MHYT. 3 hits.
[Graphical view]
PIRSFiPIRSF036615. MHYT_LytTR. 1 hit.
SMARTiSM00850. LytTR. 1 hit.
[Graphical view]
PROSITEiPS50930. HTH_LYTTR. 1 hit.
PS50924. MHYT. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete nucleotide sequence of the circular megaplasmid pHCG3 of Oligotropha carboxidovorans: function in the chemolithoautotrophic utilization of CO, H(2) and CO(2)."
    Fuhrmann S., Ferner M., Jeffke T., Henne A., Gottschalk G., Meyer O.
    Gene 322:67-75(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 49405 / DSM 1227 / OM5Imported and Plasmid pHCG3Imported.
  2. "Complete genome sequences of the chemolithoautotrophic Oligotropha carboxidovorans strains OM4 and OM5."
    Volland S., Rachinger M., Strittmatter A., Daniel R., Gottschalk G., Meyer O.
    J. Bacteriol. 193:5043-5043(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: OM5.
    Plasmid: pHCG3

Entry informationi

Entry nameiQ9KX27_OLICO
AccessioniPrimary (citable) accession number: Q9KX27
Entry historyi
Integrated into UniProtKB/TrEMBL: September 30, 2000
Last sequence update: September 30, 2000
Last modified: March 31, 2015
This is version 61 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, PlasmidImported, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.