Q9KWU1 (Q9KWU1_SPHSX) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Alginate lyase EMBL BAB03312.1

Gene names

Name:

aly EMBL BAB03312.1

Organism

Sphingomonas sp. EMBL BAB03312.1

Taxonomic identifier

28214 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Sphingomonadales › Sphingomonadaceae › Sphingomonas

Protein attributes

Sequence length	641 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Molecular function	Lyase EMBL BAB03312.1
Technical term	3D-structure PDB 3EVL PDB 3EVH PDB 3EW4 PDB 1QAZ PDB 1HV6
Gene Ontology (GO)
Biological process	alginic acid catabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	periplasmic space Inferred from electronic annotation. Source: InterPro
Molecular function	poly(beta-D-mannuronate) lyase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q9KWU1 [UniParc]. Last modified October 1, 2000. Version 1. Checksum: 6C3C655070B7AD01	FASTA	641	71,003
	10 20 30 40 50 60 MPLACLATTR VGAAREKSGD SSMFDIPFPG HGRRLAVAAL AFAGCAFAGS LQAHPFDQAV 70 80 90 100 110 120 VKDPTASYVD VKARRTFLQS GQLDDRLKAA LPKEYDCTTE ATPNPQQGEM VIPRRYLSGN 130 140 150 160 170 180 HGPVNPDYEP VVTLYRDFEK ISATLGNLYV ATGKPVYATC LLNMLDKWAK ADALLNYDPK 190 200 210 220 230 240 SQSWYQVEWS AATAAFALST MMAEPNVDTA QRERVVKWLN RVARHQTSFP GGDTSCCNNH 250 260 270 280 290 300 SYWRGQEATI IGVISKDDEL FRWGLGRYVQ AMGLINEDGS FVHEMTRHEQ SLHYQNYAML 310 320 330 340 350 360 PLTMIAETAS RQGIDLYAYK ENGRDIHSAR KFVFAAVKNP DLIKKYASEP QDTRAFKPGR 370 380 390 400 410 420 GDLNWIEYQR ARFGFADELG FMTVPIFDPR TGGSGTLLAY KPQGAAAQAP VSAPAAAHSS 430 440 450 460 470 480 IDLSKWKLQI PVDPIDVATR DLLKGYQDKY FYVDKDGSLA FWCPASGFKT TANTKYPRSE 490 500 510 520 530 540 LREMLDPDNH AVNWGWQGTH EMNLRGAVMH VSPSGKTIVM QIHAVMPDGS NAPPLVKGQF 550 560 570 580 590 600 YKNTLDFLVK NSAAGGKDTH YVFEGIELGK PYDAQIKVVD GVLSMTVNGQ TKTVDFVAKD 610 620 630 640 AGWKDLKFYF KAGNYLQDRQ ADGSDTSALV KLYKLDVKHS S

References

[1]	"A novel bacterial ATP-binding cassette transporter system that allows uptake of macromolecules." Momma K., Okamoto M., Mishima Y., Mori S., Hashimoto W., Murata K. J. Bacteriol. 182:3998-4004(2000) [PubMed: 10869078] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: A1 EMBL BAB03312.1.
[2]	"Crystal structure of alginate lyase A1-III from Sphingomonas species A1 at 1.78 A resolution." Yoon H.J., Mikami B., Hashimoto W., Murata K. J. Mol. Biol. 290:505-514(1999) [PubMed: 10390348] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (1.78 ANGSTROMS) OF 54-402.
[3]	"Crystal structure of alginate lyase A1-III complexed with trisaccharide product at 2.0 A resolution." Yoon H.J., Hashimoto W., Miyake O., Murata K., Mikami B. J. Mol. Biol. 307:9-16(2001) [PubMed: 11243798] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (2.00 ANGSTROMS) OF 54-402.
[4]	"Induced fit motion of the lid loop and catalytic mechanism of alginate lyase A1 III." Mikami B., Ban M., Suzuki S., Yoon H.J., Miyake O., Yamasaki M., Ogura K., Hashimoto W., Murata K. Submitted (OCT-2008) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (2.20 ANGSTROMS) OF 54-404.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AB011415 Genomic DNA. Translation: BAB03312.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1HV6	X-ray	2.00	A	54-402	[»]
1QAZ	X-ray	1.78	A	54-402	[»]
3EVH	X-ray	2.00	A/B	54-404	[»]
3EVL	X-ray	2.20	A/B	54-404	[»]
3EW4	X-ray	2.20	A/B	54-404	[»]

ProteinModelPortal

Q9KWU1.

SMR

Q9KWU1. Positions 53-402, 415-641.

ModBase

Search...

Protein family/group databases

CAZy

PL5. Polysaccharide Lyase Family 5.
PL7. Polysaccharide Lyase Family 7.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Family and domain databases

InterPro

IPR014895. Alginate_lyase_2.
IPR008397. Alginate_lyase_dom.
IPR008929. Chondroitin_lyas.
IPR008985. ConA-like_lec_gl.
IPR013320. ConA-like_subgrp.
[Graphical view]

Gene3D

G3DSA:1.50.10.110. Alginate_lyase. 1 hit.
G3DSA:2.60.120.200. ConA_like_subgrp. 1 hit.

Pfam

PF05426. Alginate_lyase. 1 hit.
PF08787. Alginate_lyase2. 1 hit.
[Graphical view]

SUPFAM

SSF48230. Chondroitin_lyas. 1 hit.
SSF49899. ConA_like_lec_gl. 1 hit.

ProtoNet

Search...

Entry information

Entry name

Q9KWU1_SPHSX

Accession

Primary (citable) accession number: Q9KWU1

Entry history

Integrated into UniProtKB/TrEMBL:	October 1, 2000
Last sequence update:	October 1, 2000
Last modified:	September 21, 2011
This is version 40 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)