Q9KWU1 (Q9KWU1_SPHSX) Unreviewed, UniProtKB/TrEMBL
Last modified
September 21, 2011.
Version 40.
History...
Names and origin
| Protein names | Submitted name: Alginate lyase EMBL BAB03312.1 | ||
| Gene names |
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| Organism | Sphingomonas sp. EMBL BAB03312.1 | ||
| Taxonomic identifier | 28214 [NCBI] | ||
| Taxonomic lineage | Bacteria › Proteobacteria › Alphaproteobacteria › Sphingomonadales › Sphingomonadaceae › Sphingomonas |
Protein attributes
| Sequence length | 641 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
Ontologies
| Keywords | |
|---|---|
| Molecular function | Lyase EMBL BAB03312.1 |
| Technical term | 3D-structure PDB 3EVL PDB 3EVH PDB 3EW4 PDB 1QAZ PDB 1HV6 |
| Gene Ontology (GO) | |
| Biological process | alginic acid catabolic process Inferred from electronic annotation. Source: InterPro |
| Cellular component | periplasmic space Inferred from electronic annotation. Source: InterPro |
| Molecular function | poly(beta-D-mannuronate) lyase activity Inferred from electronic annotation. Source: InterPro |
| Complete GO annotation... | |
Sequences
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References
| [1] | "A novel bacterial ATP-binding cassette transporter system that allows uptake of macromolecules." Momma K., Okamoto M., Mishima Y., Mori S., Hashimoto W., Murata K. J. Bacteriol. 182:3998-4004(2000) [PubMed: 10869078] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: A1 EMBL BAB03312.1. |
| [2] | "Crystal structure of alginate lyase A1-III from Sphingomonas species A1 at 1.78 A resolution." Yoon H.J., Mikami B., Hashimoto W., Murata K. J. Mol. Biol. 290:505-514(1999) [PubMed: 10390348] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (1.78 ANGSTROMS) OF 54-402. |
| [3] | "Crystal structure of alginate lyase A1-III complexed with trisaccharide product at 2.0 A resolution." Yoon H.J., Hashimoto W., Miyake O., Murata K., Mikami B. J. Mol. Biol. 307:9-16(2001) [PubMed: 11243798] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (2.00 ANGSTROMS) OF 54-402. |
| [4] | "Induced fit motion of the lid loop and catalytic mechanism of alginate lyase A1 III." Mikami B., Ban M., Suzuki S., Yoon H.J., Miyake O., Yamasaki M., Ogura K., Hashimoto W., Murata K. Submitted (OCT-2008) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (2.20 ANGSTROMS) OF 54-404. |
Cross-references
Sequence databases | |||||||||||||||||||||||||||||||||||||
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| EMBL GenBank DDBJ | AB011415 Genomic DNA. Translation: BAB03312.1. | ||||||||||||||||||||||||||||||||||||
3D structure databases | |||||||||||||||||||||||||||||||||||||
| PDBe RCSB PDB PDBj |
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| ProteinModelPortal | Q9KWU1. | ||||||||||||||||||||||||||||||||||||
| SMR | Q9KWU1. Positions 53-402, 415-641. | ||||||||||||||||||||||||||||||||||||
| ModBase | Search... | ||||||||||||||||||||||||||||||||||||
Protein family/group databases | |||||||||||||||||||||||||||||||||||||
| CAZy | PL5. Polysaccharide Lyase Family 5. PL7. Polysaccharide Lyase Family 7. | ||||||||||||||||||||||||||||||||||||
Protocols and materials databases | |||||||||||||||||||||||||||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||||||||||||||||||||||||||
Family and domain databases | |||||||||||||||||||||||||||||||||||||
| InterPro | IPR014895. Alginate_lyase_2. IPR008397. Alginate_lyase_dom. IPR008929. Chondroitin_lyas. IPR008985. ConA-like_lec_gl. IPR013320. ConA-like_subgrp. [Graphical view] | ||||||||||||||||||||||||||||||||||||
| Gene3D | G3DSA:1.50.10.110. Alginate_lyase. 1 hit. G3DSA:2.60.120.200. ConA_like_subgrp. 1 hit. | ||||||||||||||||||||||||||||||||||||
| Pfam | PF05426. Alginate_lyase. 1 hit. PF08787. Alginate_lyase2. 1 hit. [Graphical view] | ||||||||||||||||||||||||||||||||||||
| SUPFAM | SSF48230. Chondroitin_lyas. 1 hit. SSF49899. ConA_like_lec_gl. 1 hit. | ||||||||||||||||||||||||||||||||||||
| ProtoNet | Search... | ||||||||||||||||||||||||||||||||||||
Entry information
| Entry name | Q9KWU1_SPHSX | ||||||||
| Accession | Primary (citable) accession number: Q9KWU1 | ||||||||
| Entry history |
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| Entry status | Unreviewed (UniProtKB/TrEMBL) | ||||||||

Clusters with
