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Protein

50S ribosomal protein L27

Gene

rpmA

Organism
Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

  • structural constituent of ribosome Source: TIGR

GO - Biological processi

  • translation Source: TIGR

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciVCHO:VC0436-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L27UniRule annotation
Gene namesi
Name:rpmAUniRule annotation
Ordered Locus Names:VC_0436
OrganismiVibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Taxonomic identifieri243277 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
Proteomesi
  • UP000000584 Componenti: Chromosome 1

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001812011 – 8650S ribosomal protein L27Add BLAST86

Interactioni

Protein-protein interaction databases

STRINGi243277.VC0436.

Structurei

3D structure databases

ProteinModelPortaliQ9KUS9.
SMRiQ9KUS9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the bacterial ribosomal protein bL27 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105K46. Bacteria.
COG0211. LUCA.
KOiK02899.
OMAiNGRNNKK.

Family and domain databases

HAMAPiMF_00539. Ribosomal_L27. 1 hit.
InterProiView protein in InterPro
IPR001684. Ribosomal_L27.
IPR018261. Ribosomal_L27_CS.
PANTHERiPTHR15893. PTHR15893. 1 hit.
PfamiView protein in Pfam
PF01016. Ribosomal_L27. 1 hit.
PRINTSiPR00063. RIBOSOMALL27.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD003114. Ribosomal_L27. 1 hit.
TIGRFAMsiTIGR00062. L27. 1 hit.
PROSITEiView protein in PROSITE
PS00831. RIBOSOMAL_L27. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9KUS9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAHKKAGGST RNGRDSESKR LGVKRFGGES VLAGNIIVRQ RGTKFHAGTN
60 70 80
VGIGKDHTLF ALSDGKVKFE VKGPNNRKFV SIETAE
Length:86
Mass (Da):9,254
Last modified:October 1, 2000 - v1
Checksum:i2ED0AF2E37B40146
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE003852 Genomic DNA. Translation: AAF93609.1.
PIRiC82322.
RefSeqiNP_230090.1. NC_002505.1.
WP_000940599.1. NC_002505.1.

Genome annotation databases

EnsemblBacteriaiAAF93609; AAF93609; VC_0436.
GeneIDi2615697.
KEGGivch:VC0436.
PATRICi20079951. VBIVibCho83274_0410.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE003852 Genomic DNA. Translation: AAF93609.1.
PIRiC82322.
RefSeqiNP_230090.1. NC_002505.1.
WP_000940599.1. NC_002505.1.

3D structure databases

ProteinModelPortaliQ9KUS9.
SMRiQ9KUS9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243277.VC0436.

Protocols and materials databases

DNASUi2615697.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAF93609; AAF93609; VC_0436.
GeneIDi2615697.
KEGGivch:VC0436.
PATRICi20079951. VBIVibCho83274_0410.

Phylogenomic databases

eggNOGiENOG4105K46. Bacteria.
COG0211. LUCA.
KOiK02899.
OMAiNGRNNKK.

Enzyme and pathway databases

BioCyciVCHO:VC0436-MONOMER.

Family and domain databases

HAMAPiMF_00539. Ribosomal_L27. 1 hit.
InterProiView protein in InterPro
IPR001684. Ribosomal_L27.
IPR018261. Ribosomal_L27_CS.
PANTHERiPTHR15893. PTHR15893. 1 hit.
PfamiView protein in Pfam
PF01016. Ribosomal_L27. 1 hit.
PRINTSiPR00063. RIBOSOMALL27.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD003114. Ribosomal_L27. 1 hit.
TIGRFAMsiTIGR00062. L27. 1 hit.
PROSITEiView protein in PROSITE
PS00831. RIBOSOMAL_L27. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRL27_VIBCH
AccessioniPrimary (citable) accession number: Q9KUS9
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 5, 2002
Last sequence update: October 1, 2000
Last modified: April 12, 2017
This is version 76 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.