Q9KUQ4 (Y461_VIBCH) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
UPF0001 protein VC_0461

Gene names

Ordered Locus Names:

VC_0461

Organism

Vibrio cholerae

Taxonomic identifier

666 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Vibrionales › Vibrionaceae › Vibrio

Protein attributes

Sequence length	236 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor	Pyridoxal phosphate By similarity.
Sequence similarities	Belongs to the UPF0001 family.

Ontologies

Keywords
Ligand	Pyridoxal phosphate
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 236	236	UPF0001 protein VC_0461		PRO_0000163209
Amino acid modifications
	Modified residue	36	1	N6-(pyridoxal phosphate)lysine By similarity

Sequences

	Sequence		Length	Mass (Da)
	Q9KUQ4 [UniParc]. Last modified October 1, 2000. Version 1. Checksum: 4707D84756371C14	FASTA	236	26,420
	10 20 30 40 50 60 MRSIQQNIEH ITAQIESAQQ KCGRARSSVQ LLAVSKTKPV EAILEATQAG QRYFGENYVQ 70 80 90 100 110 120 EGVDKIRYFA EHHPQLALEW HFIGPLQSNK TRLVAEHFDW VHTIDREKIA LRLSEQRPVN 130 140 150 160 170 180 MPPLQVLIQV NTSGEASKSG IEPQQLFTLA ELISRLPNLT LRGLMSIPEN VPDYPAQLAA 190 200 210 220 230 FTQLAELQQQ LAQKYPQIDT LSMGMSGDMQ AAIEAGSTIV RIGTAIFGER DYSRNA

References

[1]

"DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae." Heidelberg J.F., Eisen J.A., Nelson W.C., Clayton R.A., Gwinn M.L., Dodson R.J., Haft D.H., Hickey E.K., Peterson J.D., Umayam L.A., Gill S.R., Nelson K.E., Read T.D., Tettelin H., Richardson D.L., Ermolaeva M.D., Vamathevan J.J., Bass S. , Qin H., Dragoi I., Sellers P., McDonald L.A., Utterback T.R., Fleischmann R.D., Nierman W.C., White O., Salzberg S.L., Smith H.O., Colwell R.R., Mekalanos J.J., Venter J.C., Fraser C.M. Nature 406:477-483(2000) [PubMed: 10952301] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 39315 / El Tor Inaba N16961 / Serotype O1.

+

Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AE003852 Genomic DNA. Translation: AAF93634.1.
PIR	E82321.
RefSeq	NP_230115.1. NC_002505.1.
3D structure databases
ProteinModelPortal	Q9KUQ4.
SMR	Q9KUQ4. Positions 4-228.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	2615123.
GenomeReviews	Gene locus VC_0461 in contig AE003852_GR.
KEGG	vch:VC0461.
PATRIC	20080017. VBIVibCho83274_0434.
TIGR	VC_0461.
Phylogenomic databases
HOGENOM	HBG289671.
OMA	HGSTMVR.
PhylomeDB	Q9KUQ4.
ProtClustDB	CLSK873985.
Family and domain databases
InterPro	IPR001608. Ala_racemase_N. IPR011078. UPF0001. [Graphical view]
KO	K06997.
PANTHER	PTHR10146. PP_YBL036C. 1 hit.
Pfam	PF01168. Ala_racemase_N. 1 hit. [Graphical view]
PIRSF	PIRSF004848. YBL036c_PLPDEIII. 1 hit.
TIGRFAMs	TIGR00044. TIGR00044. 1 hit.
PROSITE	PS01211. UPF0001. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Y461_VIBCH

Accession

Primary (citable) accession number: Q9KUQ4

Entry history

Integrated into UniProtKB/Swiss-Prot:	January 11, 2001
Last sequence update:	October 1, 2000
Last modified:	January 25, 2012
This is version 57 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program