Q9KUQ4 (Y461_VIBCH) Reviewed, UniProtKB/Swiss-Prot
Last modified
January 25, 2012.
Version 57.
History...
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: UPF0001 protein VC_0461 | ||
| Gene names |
| ||
| Organism | Vibrio cholerae | ||
| Taxonomic identifier | 666 [NCBI] | ||
| Taxonomic lineage | Bacteria › Proteobacteria › Gammaproteobacteria › Vibrionales › Vibrionaceae › Vibrio |
Protein attributes
| Sequence length | 236 AA. |
| Sequence status | Complete. |
| Protein existence | Inferred from homology |
General annotation (Comments)
| Cofactor | Pyridoxal phosphate By similarity. |
| Sequence similarities | Belongs to the UPF0001 family. |
Ontologies
| Keywords | |
|---|---|
| Ligand | Pyridoxal phosphate |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| None. [Check GOA] | |
Sequence annotation (Features)
Sequences
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References
| [1] | "DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae." Heidelberg J.F., Eisen J.A., Nelson W.C., Clayton R.A., Gwinn M.L., Dodson R.J., Haft D.H., Hickey E.K., Peterson J.D., Umayam L.A., Gill S.R., Nelson K.E., Read T.D., Tettelin H., Richardson D.L., Ermolaeva M.D., Vamathevan J.J., Bass S. Fraser C.M.Nature 406:477-483(2000) [PubMed: 10952301] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 39315 / El Tor Inaba N16961 / Serotype O1. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AE003852 Genomic DNA. Translation: AAF93634.1. |
| PIR | E82321. |
| RefSeq | NP_230115.1. NC_002505.1. |
3D structure databases | |
| ProteinModelPortal | Q9KUQ4. |
| SMR | Q9KUQ4. Positions 4-228. |
| ModBase | Search... |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| GeneID | 2615123. |
| GenomeReviews | Gene locus VC_0461 in contig AE003852_GR. |
| KEGG | vch:VC0461. |
| PATRIC | 20080017. VBIVibCho83274_0434. |
| TIGR | VC_0461. |
Phylogenomic databases | |
| HOGENOM | HBG289671. |
| OMA | HGSTMVR. |
| PhylomeDB | Q9KUQ4. |
| ProtClustDB | CLSK873985. |
Family and domain databases | |
| InterPro | IPR001608. Ala_racemase_N. IPR011078. UPF0001. [Graphical view] |
| KO | K06997. |
| PANTHER | PTHR10146. PP_YBL036C. 1 hit. |
| Pfam | PF01168. Ala_racemase_N. 1 hit. [Graphical view] |
| PIRSF | PIRSF004848. YBL036c_PLPDEIII. 1 hit. |
| TIGRFAMs | TIGR00044. TIGR00044. 1 hit. |
| PROSITE | PS01211. UPF0001. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Entry information
| Entry name | Y461_VIBCH | ||||||||
| Accession | Primary (citable) accession number: Q9KUQ4 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Prokaryotic Protein Annotation Program | ||||||||
Relevant documents
| Uncharacterized protein families (UPF) List of uncharacterized protein family (UPF) entries |
| SIMILARITY comments Index of protein domains and families |

Clusters with