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Q9KS45 (Q9KS45_VIBCH) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 61. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length1163 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Ontologies

Keywords
   LigandNucleotide-binding PDB 4GQK
   Technical term3D-structure PDB 4GQK
Complete proteome
Reference proteome
Gene Ontology (GO)
   Molecular_functionnucleotide binding

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding739 – 7424ADP PDB 4GQK

Sites

Binding site8081ADP; via carbonyl oxygen PDB 4GQK
Binding site8311Sulfate 1 PDB 4GQK
Binding site10681Sulfate 2 PDB 4GQK

Sequences

Sequence LengthMass (Da)Tools
Q9KS45 [UniParc].

Last modified October 1, 2000. Version 1.
Checksum: FF95DFEC31FE9F15

FASTA1,163128,829
        10         20         30         40         50         60 
MATLAYSIEV EGLEDETLVV RGFHGQESLS NSVFLGQACY GFRYEVQLAS RVSNLTAEQM 

        70         80         90        100        110        120 
VDKRAELKLY RNSQLVQRVH GIVRAFSQGD IGHHHTFYQL TLVPALERLS LRHNSRIFQK 

       130        140        150        160        170        180 
QTVPEILSIL LQEMGINDYA FALKRDGVQR EFCVQYRESD IDFLHRLAAE EGLVYSFVHE 

       190        200        210        220        230        240 
AGKHTLYFSD ASDSLSKLPE PIPYNALVGG AIDTPYIHGL TYRTQAEVSE VQLKDYSFKK 

       250        260        270        280        290        300 
PAYSFLQTVQ GTELDYQQTR YQHFDAPGRY KDDVNGAAFS QIRLDYLRRH AHTATGQSNE 

       310        320        330        340        350        360 
PLLRAGYKFD LQEHLDPAMN RDWVVVSINH QGEQPQALQE DGGSGATTYS NQFSLIPGHL 

       370        380        390        400        410        420 
HWRAEPQPKP QVDGPMIATV VGPEGEEIFC DEHGRVKIHF PWDRYSNGNE QSSCWVRVSQ 

       430        440        450        460        470        480 
GWAGSQYGFI AIPRIGHEVI VEFLNGDPDQ PIITGRTYHA TNTPPYTLPE HKTKTVLRTE 

       490        500        510        520        530        540 
THQGEGFNEL SFEDQAGKEQ IYLHAQKDFD GLIENDHTTV IRHDHHLTVE NDQFTQIKHN 

       550        560        570        580        590        600 
QHLTVEWESR EAVTGEQVLS IEGSLHVKTG KVWVNEAGTE IHVKAGQKVV IEAGSEITVK 

       610        620        630        640        650        660 
AGGSFVKVDP AGVHLSGALV NLNSGGSAGS GSGFGGAMPA LPGGLEPAVA LAPPQTISYQ 

       670        680        690        700        710        720 
ALLQAEQANV PAVKVCPLAA QEATPAVNSI TPPPPPPIAP PMAPPQPIMN PQPTANAQPN 

       730        740        750        760        770        780 
LGRSTKATPD FPTHFPKSSI GIENELAGLV VAMPANSAQK FGYVKSAQGD ALFMLTKDMN 

       790        800        810        820        830        840 
QGSYQRPPSL QDGKNYQNWQ THTVELVSYP CEMDDKAAVE TRKQAMLWLA THFTTHIDQS 

       850        860        870        880        890        900 
NHQPLAPIQS EDGRFVIEIT NAKHVIAAGN GISAESQGQT ITMTPSGQQA TVGVAAKGFG 

       910        920        930        940        950        960 
TSATPELRLL ESAPWYQKSL KSQFASLTSA ENLDDKELAA NVFAYLTSIY LKTAELAKKF 

       970        980        990       1000       1010       1020 
GIYINEWDPM SEQITPNANG LTDPKVKNAW EILPRTKPSK IVEILSKSDA KAVMKHIKPQ 

      1030       1040       1050       1060       1070       1080 
LQSRYSESLS KNVFQYFQDG GEVAGHGINN ATVGDKHSPE LAILFEFRTV PNELQSYLPK 

      1090       1100       1110       1120       1130       1140 
TESTTKSEVK LLDQFDPMKR KTVIQQVESL VQNSGDAFDK WYQSYRDSMN QPPVKNAKKI 

      1150       1160 
ASANQKAQWV KEHNPQEWQR IIA 

« Hide

References

« Hide 'large scale' references
[1]"DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae."
Heidelberg J.F., Eisen J.A., Nelson W.C., Clayton R.A., Gwinn M.L., Dodson R.J., Haft D.H., Hickey E.K., Peterson J.D., Umayam L.A., Gill S.R., Nelson K.E., Read T.D., Tettelin H., Richardson D.L., Ermolaeva M.D., Vamathevan J.J., Bass S. expand/collapse author list , Qin H., Dragoi I., Sellers P., McDonald L.A., Utterback T.R., Fleischmann R.D., Nierman W.C., White O., Salzberg S.L., Smith H.O., Colwell R.R., Mekalanos J.J., Venter J.C., Fraser C.M.
Nature 406:477-483(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 39315 / El Tor Inaba N16961.
[2]"Structure of Native VgrG1-ACD with ADP (no cations)."
Nguyen V.S., Spinelli S., Derrez E., Durand E., Cambillau C
Submitted (AUG-2012) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (2.36 ANGSTROMS) OF 717-1111 IN COMPLEX WITH ADP AND SULFATE.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE003852 Genomic DNA. Translation: AAF94573.1.
PIRD82202.
RefSeqNP_231059.1. NC_002505.1.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
4GQKX-ray2.36A717-1111[»]
ProteinModelPortalQ9KS45.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING243277.VC1416.

Protocols and materials databases

DNASU2614048.
StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAF94573; AAF94573; VC_1416.
GeneID2614048.
KEGGvch:VC1416.
PATRIC20081892. VBIVibCho83274_1345.

Phylogenomic databases

KOK11904.
OMALIENDQF.
OrthoDBEOG69SK6H.

Enzyme and pathway databases

BioCycVCHO:VC1416-MONOMER.

Family and domain databases

Gene3D2.40.50.230. 1 hit.
InterProIPR006531. Gp5_N-like_dom.
IPR017847. T6SS_RhsGE_Vgr_subset.
IPR006533. T6SS_Vgr_RhsGE.
[Graphical view]
PfamPF04717. Phage_base_V. 1 hit.
[Graphical view]
TIGRFAMsTIGR01646. vgr_GE. 1 hit.
TIGR03361. VI_Rhs_Vgr. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ9KS45_VIBCH
AccessionPrimary (citable) accession number: Q9KS45
Entry history
Integrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: October 1, 2000
Last modified: June 11, 2014
This is version 61 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)