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Protein
Submitted name:

Sigma-54 dependent response regulator

Gene

VC_1522

Organism
Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  • ATP binding Source: UniProtKB-KW
  • phosphorelay response regulator activity Source: TIGR
  • sequence-specific DNA binding Source: InterPro

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotationSAAS annotation, Two-component regulatory systemSAAS annotation

Keywords - Ligandi

ATP-bindingUniRule annotationSAAS annotation, DNA-bindingSAAS annotation, Nucleotide-binding

Enzyme and pathway databases

BioCyciVCHO:VC1522-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Sigma-54 dependent response regulatorImported
Gene namesi
Ordered Locus Names:VC_1522Imported
OrganismiVibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)Imported
Taxonomic identifieri243277 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
Proteomesi
  • UP000000584 Componenti: Chromosome 1

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi243277.VC1522.

Structurei

3D structure databases

ProteinModelPortaliQ9KRW2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini17 – 131115Response regulatoryInterPro annotationAdd
BLAST
Domaini155 – 383229Sigma-54 factor interactionInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 sigma-54 factor interaction domain.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105C1W. Bacteria.
COG2204. LUCA.
OMAiCGAIAPD.
OrthoDBiEOG6WHNMG.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
3.40.50.300. 1 hit.
InterProiIPR003593. AAA+_ATPase.
IPR011006. CheY-like_superfamily.
IPR009057. Homeodomain-like.
IPR002197. HTH_Fis.
IPR027417. P-loop_NTPase.
IPR001789. Sig_transdc_resp-reg_receiver.
IPR002078. Sigma_54_int.
IPR025662. Sigma_54_int_dom_ATP-bd_1.
IPR025943. Sigma_54_int_dom_ATP-bd_2.
IPR025944. Sigma_54_int_dom_CS.
[Graphical view]
PfamiPF02954. HTH_8. 1 hit.
PF00072. Response_reg. 1 hit.
PF00158. Sigma54_activat. 1 hit.
[Graphical view]
SMARTiSM00382. AAA. 1 hit.
SM00448. REC. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF52172. SSF52172. 1 hit.
SSF52540. SSF52540. 1 hit.
PROSITEiPS50110. RESPONSE_REGULATORY. 1 hit.
PS00675. SIGMA54_INTERACT_1. 1 hit.
PS00676. SIGMA54_INTERACT_2. 1 hit.
PS00688. SIGMA54_INTERACT_3. 1 hit.
PS50045. SIGMA54_INTERACT_4. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9KRW2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSPVLDLNQT HLYQAFSVLL VDDEVGMQLV LKKALSKWFS RVDLASSIEE
60 70 80 90 100
AEVLRGEHHY DLLILDINLP GRSGIEWEEA FTDPDHRADV IFMTGFADLE
110 120 130 140 150
TAISALKLGA SDFILKPFNL EQMLQAVQRC MNKRLNERLQ YALQRDFQRH
160 170 180 190 200
CTTQIIGSSV QTELLKQRIV QFAPSRASVL IEGESGTGKE LVARGIHEAS
210 220 230 240 250
GRQGPFVPIN CGAIAPELLE SELFGHTSGA FTGAKKSREG LFRVANGGTL
260 270 280 290 300
FLDEIGEMPL TMQASLLRVL EQRAVRPVGS EKEVNVDVRV VAATNRNLQQ
310 320 330 340 350
EVENGRFRGD LYYRLNVLKI EVSPLRERKQ DLHELLPFFT KMLCAELGMP
360 370 380 390 400
MPKWAYEDIS SMQDYDWPGN IRELKNLIER CLLLGKPPAH YWRELNGLPI
410 420 430 440 450
YAEPEVTMSQ SNNSEISLGD NVTQPSLGYP NDWPLSAVEK AHIQQIVALH
460 470 480
EGNKSAAARD LGVARKTLER KYKEWESEDL SHES
Length:484
Mass (Da):54,522
Last modified:October 1, 2000 - v1
Checksum:iCA64872F009C6E96
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE003852 Genomic DNA. Translation: AAF94676.1.
PIRiF82190.
RefSeqiNP_231162.1. NC_002505.1.
WP_000075518.1. NC_002505.1.

Genome annotation databases

EnsemblBacteriaiAAF94676; AAF94676; VC_1522.
GeneIDi2613901.
KEGGivch:VC1522.
PATRICi20082103. VBIVibCho83274_1450.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE003852 Genomic DNA. Translation: AAF94676.1.
PIRiF82190.
RefSeqiNP_231162.1. NC_002505.1.
WP_000075518.1. NC_002505.1.

3D structure databases

ProteinModelPortaliQ9KRW2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243277.VC1522.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAF94676; AAF94676; VC_1522.
GeneIDi2613901.
KEGGivch:VC1522.
PATRICi20082103. VBIVibCho83274_1450.

Phylogenomic databases

eggNOGiENOG4105C1W. Bacteria.
COG2204. LUCA.
OMAiCGAIAPD.
OrthoDBiEOG6WHNMG.

Enzyme and pathway databases

BioCyciVCHO:VC1522-MONOMER.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
3.40.50.300. 1 hit.
InterProiIPR003593. AAA+_ATPase.
IPR011006. CheY-like_superfamily.
IPR009057. Homeodomain-like.
IPR002197. HTH_Fis.
IPR027417. P-loop_NTPase.
IPR001789. Sig_transdc_resp-reg_receiver.
IPR002078. Sigma_54_int.
IPR025662. Sigma_54_int_dom_ATP-bd_1.
IPR025943. Sigma_54_int_dom_ATP-bd_2.
IPR025944. Sigma_54_int_dom_CS.
[Graphical view]
PfamiPF02954. HTH_8. 1 hit.
PF00072. Response_reg. 1 hit.
PF00158. Sigma54_activat. 1 hit.
[Graphical view]
SMARTiSM00382. AAA. 1 hit.
SM00448. REC. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF52172. SSF52172. 1 hit.
SSF52540. SSF52540. 1 hit.
PROSITEiPS50110. RESPONSE_REGULATORY. 1 hit.
PS00675. SIGMA54_INTERACT_1. 1 hit.
PS00676. SIGMA54_INTERACT_2. 1 hit.
PS00688. SIGMA54_INTERACT_3. 1 hit.
PS50045. SIGMA54_INTERACT_4. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 39315 / El Tor Inaba N16961Imported.

Entry informationi

Entry nameiQ9KRW2_VIBCH
AccessioniPrimary (citable) accession number: Q9KRW2
Entry historyi
Integrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: October 1, 2000
Last modified: July 6, 2016
This is version 117 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.