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Protein
Submitted name:

DNA ligase

Gene

VC_1542

Organism
Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  • ATP binding Source: InterPro
  • DNA ligase (ATP) activity Source: TIGR

GO - Biological processi

  • DNA ligation Source: TIGR
  • DNA ligation involved in DNA repair Source: InterPro
  • DNA recombination Source: TIGR
  • DNA repair Source: TIGR
  • DNA replication Source: TIGR

Keywordsi

Molecular functionLigaseImported

Enzyme and pathway databases

BioCyciVCHO:VC1542-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligaseImported
Gene namesi
Ordered Locus Names:VC_1542Imported
OrganismiVibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)Imported
Taxonomic identifieri243277 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
Proteomesi
  • UP000000584 Componenti: Chromosome 1

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 20Sequence analysisAdd BLAST20
ChainiPRO_500432898221 – 282Sequence analysisAdd BLAST262

Interactioni

Protein-protein interaction databases

STRINGi243277.VC1542.

Structurei

3D structure databases

ProteinModelPortaliQ9KRU2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini132 – 232DNA_LIGASE_A3InterPro annotationAdd BLAST101

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG4105E1T. Bacteria.
COG1793. LUCA.
KOiK10747.
OMAiVRGYWDG.

Family and domain databases

InterProiView protein in InterPro
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
PfamiView protein in Pfam
PF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiView protein in PROSITE
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9KRU2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLIRLTLTAA AIMLAQQTLA NDGPLAFIPI TYANNYQHGI DIFDYWKSEK
60 70 80 90 100
LDGIRAIWTG KQLVTRNGNP IAAPAWFTES LPSYSLEGEL WAGRGNFSLV
110 120 130 140 150
QQTVLDSQPA DSAWRKISLM LFDMPDAAGD YSKRYYNLIH LVNSLDLKHI
160 170 180 190 200
RYVEHTPIKS EAELLSYLDN ISEKSGEGVM LRKISARYQA GRSNDLLKLK
210 220 230 240 250
RHQDAEATVI GYRLGMGKYK GKMGSMLVRT AEGLEFYIGS GFSDVERAEP
260 270 280
PKIGSVITYR YNGLTTEGKP RFARFVRVRE NY
Length:282
Mass (Da):31,815
Last modified:October 1, 2000 - v1
Checksum:iE3E5F1D90D43EFDA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE003852 Genomic DNA. Translation: AAF94696.1.
PIRiB82187.
RefSeqiNP_231182.1. NC_002505.1.
WP_000908473.1. NC_002505.1.

Genome annotation databases

EnsemblBacteriaiAAF94696; AAF94696; VC_1542.
GeneIDi2613921.
KEGGivch:VC1542.
PATRICifig|243277.26.peg.1471.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiQ9KRU2_VIBCH
AccessioniPrimary (citable) accession number: Q9KRU2
Entry historyiIntegrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: October 1, 2000
Last modified: June 7, 2017
This is version 88 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported