Q9KRU2 (Q9KRU2_VIBCH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase EMBL AAF94696.1

Gene names

Ordered Locus Names:

VC_1542

Organism

Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) [Reference proteome] [HAMAP]

Taxonomic identifier

243277 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Vibrionales › Vibrionaceae › Vibrio › Vibrio cholerae › Vibrio cholerae O1 › Vibrio cholerae O1 biovar El Tor

Protein attributes

Sequence length	282 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL AAF94696.1
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from sequence or structural similarity Ref.1. Source: TIGR DNA repair Inferred from sequence or structural similarity Ref.1. Source: TIGR DNA replication Inferred from sequence or structural similarity Ref.1. Source: TIGR
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from sequence or structural similarity Ref.1. Source: TIGR
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q9KRU2 [UniParc]. Last modified October 1, 2000. Version 1. Checksum: E3E5F1D90D43EFDA	FASTA	282	31,815
	10 20 30 40 50 60 MLIRLTLTAA AIMLAQQTLA NDGPLAFIPI TYANNYQHGI DIFDYWKSEK LDGIRAIWTG 70 80 90 100 110 120 KQLVTRNGNP IAAPAWFTES LPSYSLEGEL WAGRGNFSLV QQTVLDSQPA DSAWRKISLM 130 140 150 160 170 180 LFDMPDAAGD YSKRYYNLIH LVNSLDLKHI RYVEHTPIKS EAELLSYLDN ISEKSGEGVM 190 200 210 220 230 240 LRKISARYQA GRSNDLLKLK RHQDAEATVI GYRLGMGKYK GKMGSMLVRT AEGLEFYIGS 250 260 270 280 GFSDVERAEP PKIGSVITYR YNGLTTEGKP RFARFVRVRE NY

References

[1]

"DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae." Heidelberg J.F., Eisen J.A., Nelson W.C., Clayton R.A., Gwinn M.L., Dodson R.J., Haft D.H., Hickey E.K., Peterson J.D., Umayam L.A., Gill S.R., Nelson K.E., Read T.D., Tettelin H., Richardson D.L., Ermolaeva M.D., Vamathevan J.J., Bass S. , Qin H., Dragoi I., Sellers P., McDonald L.A., Utterback T.R., Fleischmann R.D., Nierman W.C., White O., Salzberg S.L., Smith H.O., Colwell R.R., Mekalanos J.J., Venter J.C., Fraser C.M. Nature 406:477-483(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 39315 / El Tor Inaba N16961.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AE003852 Genomic DNA. Translation: AAF94696.1.
PIR	B82187.
RefSeq	NP_231182.1. NC_002505.1.
3D structure databases
HSSP	HSSP built from PDB template 1FVI based on UniProtKB O41026.
ProteinModelPortal	Q9KRU2.
ModBase	Search...
Protein-protein interaction databases
STRING	243277.VC1542.
Protocols and materials databases
DNASU	2613921.
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AAF94696; AAF94696; VC_1542.
GeneID	2613921.
KEGG	vch:VC1542.
PATRIC	20082145. VBIVibCho83274_1471.
Phylogenomic databases
KO	K01971.
OMA	VRGYWDG.
ProtClustDB	PRK09125.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
PROSITE	PS00333. DNA_LIGASE_A2. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q9KRU2_VIBCH

Accession

Primary (citable) accession number: Q9KRU2

Entry history

Integrated into UniProtKB/TrEMBL:	October 1, 2000
Last sequence update:	October 1, 2000
Last modified:	May 1, 2013
This is version 67 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)