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Protein
Submitted name:

Transcriptional regulator, HTH_3 family

Gene

VC_1968

Organism
Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi120Zinc; via tele nitrogenCombined sources1
Metal bindingi126ZincCombined sources1
Metal bindingi160Zinc; via tele nitrogenCombined sources1
Metal bindingi162ZincCombined sources1

GO - Molecular functioni

GO - Biological processi

  • regulation of transcription, DNA-templated Source: TIGR

Keywordsi

LigandMetal-bindingCombined sources, ZincCombined sources

Enzyme and pathway databases

BioCyciVCHO:VC1968-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Transcriptional regulator, HTH_3 familyImported
Gene namesi
Ordered Locus Names:VC_1968Imported
OrganismiVibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)Imported
Taxonomic identifieri243277 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
Proteomesi
  • UP000000584 Componenti: Chromosome 1

Pathology & Biotechi

Chemistry databases

DrugBankiDB02893. D-Methionine.

Interactioni

Protein-protein interaction databases

STRINGi243277.VC1968.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1Y9QX-ray1.90A2-180[»]
ProteinModelPortaliQ9KQN0.
SMRiQ9KQN0.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9KQN0.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini14 – 68HTH cro/C1-typeInterPro annotationAdd BLAST55

Phylogenomic databases

eggNOGiENOG4108JCI. Bacteria.
COG1396. LUCA.
OMAiEQARTNP.

Family and domain databases

Gene3Di2.60.120.10. 1 hit.
InterProiView protein in InterPro
IPR001387. Cro/C1-type_HTH.
IPR010982. Lambda_DNA-bd_dom.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
PfamiView protein in Pfam
PF01381. HTH_3. 1 hit.
SMARTiView protein in SMART
SM00530. HTH_XRE. 1 hit.
SUPFAMiSSF47413. SSF47413. 1 hit.
SSF51182. SSF51182. 1 hit.
PROSITEiView protein in PROSITE
PS50943. HTH_CROC1. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9KQN0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTDVMFKSQI ANQLKNLRKS RGLSLDATAQ LTGVSKAMLG QIERGESSPT
60 70 80 90 100
IATLWKIASG LEASFSAFFA NDPQLLSSER SFPDDLNMKI HTLFPYAADT
110 120 130 140 150
GLEIFEITLL DHHQQMSSPH ALGVIEYIHV LEGIMKVFFD EQWHELQQGE
160 170 180
HIRFFSDQPH GYAAVTEKAV FQNIVAYPRR G
Length:181
Mass (Da):20,354
Last modified:October 1, 2000 - v1
Checksum:i205020F270ED91DF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE003852 Genomic DNA. Translation: AAF95116.1.
PIRiB82134.
RefSeqiNP_231602.1. NC_002505.1.
WP_000133005.1. NC_002505.1.

Genome annotation databases

EnsemblBacteriaiAAF95116; AAF95116; VC_1968.
GeneIDi2613472.
KEGGivch:VC1968.
PATRICifig|243277.26.peg.1881.

Similar proteinsi

Entry informationi

Entry nameiQ9KQN0_VIBCH
AccessioniPrimary (citable) accession number: Q9KQN0
Entry historyiIntegrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: October 1, 2000
Last modified: September 27, 2017
This is version 88 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported