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Protein
Submitted name:

Transcriptional regulator, ROK family

Gene

VC_2007

Organism
Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi245 – 2451Zinc; via pros nitrogenCombined sources
Metal bindingi255 – 2551ZincCombined sources
Metal bindingi257 – 2571ZincCombined sources
Metal bindingi262 – 2621ZincCombined sources

GO - Molecular functioni

  • metal ion binding Source: UniProtKB-KW
  • transcription factor activity, sequence-specific DNA binding Source: TIGR

GO - Biological processi

  • regulation of transcription, DNA-templated Source: TIGR
Complete GO annotation...

Keywords - Ligandi

Metal-bindingCombined sources, ZincCombined sources

Enzyme and pathway databases

BioCyciVCHO:VC2007-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Transcriptional regulator, ROK familyImported
Gene namesi
Ordered Locus Names:VC_2007Imported
OrganismiVibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)Imported
Taxonomic identifieri243277 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
Proteomesi
  • UP000000584 Componenti: Chromosome 1

Interactioni

Protein-protein interaction databases

STRINGi243277.VC2007.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1Z05X-ray2.00A1-405[»]
ProteinModelPortaliQ9KQJ1.
SMRiQ9KQJ1. Positions 10-405.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9KQJ1.

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4105DAG. Bacteria.
COG1940. LUCA.
KOiK15545.
OMAiPGLIDKN.
OrthoDBiEOG622PS4.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR000600. ROK.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00480. ROK. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS01125. ROK. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9KQJ1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MYMAQPGHID HIKQINAGRV YKLIDQKGPI SRIDLSKESE LAPASITKIT
60 70 80 90 100
RELIDAHLIH ETTVQEAISR GRPAVGLQTN NLGWQFLSMR LGRGYLTIAL
110 120 130 140 150
HELGGEVLID TKIDIHEIDQ DDVLARLLFE IEEFFQTYAA QLDRVTSIAI
160 170 180 190 200
TLPGLVNSEQ GIVLQMPHYN VKNLALGPEI YKATGLPVFV ANDTRAWALA
210 220 230 240 250
EKLFGHSQDV DNSVLISIHH GLGAGIVLDG RVLQGRHGNI GELGHIQIDP
260 270 280 290 300
QGKRCHCGNY GCLETVASSQ AIRDQVTARI QAGEPSCLAT VEEISIEDIC
310 320 330 340 350
AAAADGDPLA VDVIQQLGRY LGAAIAIVIN LFNPEKILIG GVINQAKSIL
360 370 380 390 400
YPSIEQCIRE QSLPVYHQDL KLVESRFYKQ ATMPGAALIK QALYDGLLLM

KVVEG
Length:405
Mass (Da):44,293
Last modified:October 1, 2000 - v1
Checksum:i11775EF964D177BC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE003852 Genomic DNA. Translation: AAF95155.1.
PIRiA82130.
RefSeqiNP_231641.1. NC_002505.1.
WP_000281794.1. NC_002505.1.

Genome annotation databases

EnsemblBacteriaiAAF95155; AAF95155; VC_2007.
GeneIDi2613511.
KEGGivch:VC2007.
PATRICi20083046. VBIVibCho83274_1917.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE003852 Genomic DNA. Translation: AAF95155.1.
PIRiA82130.
RefSeqiNP_231641.1. NC_002505.1.
WP_000281794.1. NC_002505.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1Z05X-ray2.00A1-405[»]
ProteinModelPortaliQ9KQJ1.
SMRiQ9KQJ1. Positions 10-405.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243277.VC2007.

Protocols and materials databases

DNASUi2613511.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAF95155; AAF95155; VC_2007.
GeneIDi2613511.
KEGGivch:VC2007.
PATRICi20083046. VBIVibCho83274_1917.

Phylogenomic databases

eggNOGiENOG4105DAG. Bacteria.
COG1940. LUCA.
KOiK15545.
OMAiPGLIDKN.
OrthoDBiEOG622PS4.

Enzyme and pathway databases

BioCyciVCHO:VC2007-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ9KQJ1.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR000600. ROK.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00480. ROK. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS01125. ROK. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 39315 / El Tor Inaba N16961Imported.
  2. "Crystal structure of the ROK family transcriptional regulator, homolog of E.coli MLC protein."
    Minasov G., Brunzelle J.S., Shuvalova L., Collart F.R., Anderson W.F.
    Submitted (MAR-2005) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.00 ANGSTROMS) IN COMPLEX WITH ZINC.

Entry informationi

Entry nameiQ9KQJ1_VIBCH
AccessioniPrimary (citable) accession number: Q9KQJ1
Entry historyi
Integrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: October 1, 2000
Last modified: March 16, 2016
This is version 77 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.