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Protein
Submitted name:

Glycine cleavage system transcriptional repressor, putative

Gene

VC_2159

Organism
Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

  • regulation of transcription, DNA-templated Source: TIGR
Complete GO annotation...

Enzyme and pathway databases

BioCyciVCHO:VC2159-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Glycine cleavage system transcriptional repressor, putativeImported
Gene namesi
Ordered Locus Names:VC_2159Imported
OrganismiVibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)Imported
Taxonomic identifieri243277 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
Proteomesi
  • UP000000584 Componenti: Chromosome 1

Interactioni

Protein-protein interaction databases

STRINGi243277.VC2159.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1U8SX-ray2.45A/B2-180[»]
ProteinModelPortaliQ9KQ45.
SMRiQ9KQ45. Positions 1-178.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9KQ45.

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4105RH4. Bacteria.
COG2716. LUCA.
KOiK03567.
OMAiDLITIMK.
OrthoDBiEOG65F8X8.

Family and domain databases

InterProiIPR016867. GcvR.
[Graphical view]
PIRSFiPIRSF028103. GcvR. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9KQ45-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTQHLVITAV GTDRPGICNE VVRLVTQAGC NIIDSRIAMF GKEFTLLMLI
60 70 80 90 100
SGSPSNITRV ETTLPLLGQQ HDLITMMKRT SPHDHQTHAY TVEVYVESDD
110 120 130 140 150
KLGLTEKFTQ FFAQRQIGMA SLSAQTISKD KLHSEQNQFH IAISARVDSG
160 170 180
CNLMQLQEEF DALCTALDVQ GSLNFIKNSQ
Length:180
Mass (Da):20,013
Last modified:October 1, 2000 - v1
Checksum:iC4709F0266EFDAE3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE003852 Genomic DNA. Translation: AAF95304.1.
PIRiH82109.
RefSeqiNP_231790.1. NC_002505.1.
WP_000191995.1. NC_002505.1.

Genome annotation databases

EnsemblBacteriaiAAF95304; AAF95304; VC_2159.
GeneIDi2613295.
KEGGivch:VC2159.
PATRICi20083337. VBIVibCho83274_2060.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE003852 Genomic DNA. Translation: AAF95304.1.
PIRiH82109.
RefSeqiNP_231790.1. NC_002505.1.
WP_000191995.1. NC_002505.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1U8SX-ray2.45A/B2-180[»]
ProteinModelPortaliQ9KQ45.
SMRiQ9KQ45. Positions 1-178.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243277.VC2159.

Protocols and materials databases

DNASUi2613295.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAF95304; AAF95304; VC_2159.
GeneIDi2613295.
KEGGivch:VC2159.
PATRICi20083337. VBIVibCho83274_2060.

Phylogenomic databases

eggNOGiENOG4105RH4. Bacteria.
COG2716. LUCA.
KOiK03567.
OMAiDLITIMK.
OrthoDBiEOG65F8X8.

Enzyme and pathway databases

BioCyciVCHO:VC2159-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ9KQ45.

Family and domain databases

InterProiIPR016867. GcvR.
[Graphical view]
PIRSFiPIRSF028103. GcvR. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 39315 / El Tor Inaba N16961Imported.
  2. "Crystal structure of putative glycine cleavage system transcriptional repressor."
    Kumaran D., Swaminathan S.
    Submitted (AUG-2004) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.45 ANGSTROMS) OF 2-180.

Entry informationi

Entry nameiQ9KQ45_VIBCH
AccessioniPrimary (citable) accession number: Q9KQ45
Entry historyi
Integrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: October 1, 2000
Last modified: April 13, 2016
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.