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Q9KPM0

- DEOD1_VIBCH

UniProt

Q9KPM0 - DEOD1_VIBCH

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Protein

Purine nucleoside phosphorylase DeoD-type 1

Gene
deoD1, VC_2347
Organism
Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Status
Reviewed - Annotation score: 2 out of 5 - Experimental evidence at protein leveli

Functioni

Catalytic activityi

Purine nucleoside + phosphate = purine + alpha-D-ribose 1-phosphate.UniRule annotation
Purine deoxynucleoside + phosphate = purine + 2'-deoxy-alpha-D-ribose 1-phosphate.UniRule annotation

GO - Molecular functioni

  1. purine-nucleoside phosphorylase activity Source: TIGR

GO - Biological processi

  1. nucleobase-containing compound metabolic process Source: TIGR
  2. purine nucleoside metabolic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Enzyme and pathway databases

BioCyciVCHO:VC2347-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Purine nucleoside phosphorylase DeoD-type 1 (EC:2.4.2.1)
Short name:
PNP 1
Gene namesi
Name:deoD1
Ordered Locus Names:VC_2347
OrganismiVibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Taxonomic identifieri243277 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
ProteomesiUP000000584: Chromosome 1

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 241241Purine nucleoside phosphorylase DeoD-type 1UniRule annotationPRO_0000063169Add
BLAST

Interactioni

Subunit structurei

Homohexamer By similarity.UniRule annotation

Protein-protein interaction databases

STRINGi243277.VC2347.

Structurei

Secondary structure

1
241
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi15 – 195
Helixi23 – 3311
Beta strandi34 – 418
Helixi43 – 453
Beta strandi48 – 536
Beta strandi56 – 616
Helixi67 – 8115
Beta strandi85 – 9410
Beta strandi104 – 11310
Helixi116 – 1205
Turni121 – 1233
Helixi132 – 14413
Beta strandi150 – 1567
Helixi166 – 1738
Beta strandi178 – 1825
Helixi183 – 19311
Beta strandi196 – 20611
Turni207 – 2093
Helixi215 – 23723

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VHJX-ray2.23A/B/C/D/E/F2-241[»]
1VHWX-ray1.54A/B/C/D/E/F2-241[»]
3OF3X-ray1.83A/B/C/D/E/F/G/H/I/J/K/L1-241[»]
ProteinModelPortaliQ9KPM0.
SMRiQ9KPM0. Positions 2-238.

Miscellaneous databases

EvolutionaryTraceiQ9KPM0.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0813.
KOiK03784.
OMAiRQTTFSE.
OrthoDBiEOG6BKJC5.

Family and domain databases

Gene3Di3.40.50.1580. 1 hit.
HAMAPiMF_01627. Pur_nucleosid_phosp.
InterProiIPR004402. DeoD-type.
IPR018017. Nucleoside_phosphorylase.
IPR018016. Nucleoside_phosphorylase_CS.
IPR000845. Nucleoside_phosphorylase_d.
[Graphical view]
PANTHERiPTHR21234. PTHR21234. 1 hit.
PfamiPF01048. PNP_UDP_1. 1 hit.
[Graphical view]
SUPFAMiSSF53167. SSF53167. 1 hit.
TIGRFAMsiTIGR00107. deoD. 1 hit.
PROSITEiPS01232. PNP_UDP_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9KPM0-1 [UniParc]FASTAAdd to Basket

« Hide

MATPHINAQM GDFADVVLMP GDPLRAKYIA ENFLDNAVQV CDVRNMFGYT    50
GTYKGRKISV MGHGMGIPSC SIYVTELIKD YGVKKIIRVG SCGAVNEGIK 100
VRDVVIGMGA CTDSKVNRIR FKDHDFAAIA DYKMVKAAEE AAKARGIDVK 150
VGNLFSAELF YTPDPSMFDV MDKYGIVGVE MEAAGIYGVA AEYGAKALAI 200
CTVSDHIKTG EQTTSEERQN TFNEMIEIAL DSVLIGDQAG Y 241
Length:241
Mass (Da):26,124
Last modified:October 1, 2000 - v1
Checksum:i6E55A07972166241
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE003852 Genomic DNA. Translation: AAF95490.1.
PIRiC82087.
RefSeqiNP_231977.1. NC_002505.1.

Genome annotation databases

EnsemblBacteriaiAAF95490; AAF95490; VC_2347.
GeneIDi2613143.
KEGGivch:VC2347.
PATRICi20083719. VBIVibCho83274_2234.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE003852 Genomic DNA. Translation: AAF95490.1 .
PIRi C82087.
RefSeqi NP_231977.1. NC_002505.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1VHJ X-ray 2.23 A/B/C/D/E/F 2-241 [» ]
1VHW X-ray 1.54 A/B/C/D/E/F 2-241 [» ]
3OF3 X-ray 1.83 A/B/C/D/E/F/G/H/I/J/K/L 1-241 [» ]
ProteinModelPortali Q9KPM0.
SMRi Q9KPM0. Positions 2-238.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 243277.VC2347.

Protocols and materials databases

DNASUi 2613143.
Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAF95490 ; AAF95490 ; VC_2347 .
GeneIDi 2613143.
KEGGi vch:VC2347.
PATRICi 20083719. VBIVibCho83274_2234.

Phylogenomic databases

eggNOGi COG0813.
KOi K03784.
OMAi RQTTFSE.
OrthoDBi EOG6BKJC5.

Enzyme and pathway databases

BioCyci VCHO:VC2347-MONOMER.

Miscellaneous databases

EvolutionaryTracei Q9KPM0.

Family and domain databases

Gene3Di 3.40.50.1580. 1 hit.
HAMAPi MF_01627. Pur_nucleosid_phosp.
InterProi IPR004402. DeoD-type.
IPR018017. Nucleoside_phosphorylase.
IPR018016. Nucleoside_phosphorylase_CS.
IPR000845. Nucleoside_phosphorylase_d.
[Graphical view ]
PANTHERi PTHR21234. PTHR21234. 1 hit.
Pfami PF01048. PNP_UDP_1. 1 hit.
[Graphical view ]
SUPFAMi SSF53167. SSF53167. 1 hit.
TIGRFAMsi TIGR00107. deoD. 1 hit.
PROSITEi PS01232. PNP_UDP_1. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 39315 / El Tor Inaba N16961.
  2. Cited for: X-RAY CRYSTALLOGRAPHY (2.23 ANGSTROMS) OF 2-241.

Entry informationi

Entry nameiDEOD1_VIBCH
AccessioniPrimary (citable) accession number: Q9KPM0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 24, 2006
Last sequence update: October 1, 2000
Last modified: May 14, 2014
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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