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Q9KPM0

- DEOD1_VIBCH

UniProt

Q9KPM0 - DEOD1_VIBCH

Protein

Purine nucleoside phosphorylase DeoD-type 1

Gene

deoD1

Organism
Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 77 (01 Oct 2014)
      Sequence version 1 (01 Oct 2000)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Purine nucleoside + phosphate = purine + alpha-D-ribose 1-phosphate.UniRule annotation
    Purine deoxynucleoside + phosphate = purine + 2'-deoxy-alpha-D-ribose 1-phosphate.UniRule annotation

    GO - Molecular functioni

    1. purine-nucleoside phosphorylase activity Source: TIGR

    GO - Biological processi

    1. nucleobase-containing compound metabolic process Source: TIGR
    2. purine nucleoside metabolic process Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Glycosyltransferase, Transferase

    Enzyme and pathway databases

    BioCyciVCHO:VC2347-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Purine nucleoside phosphorylase DeoD-type 1UniRule annotation (EC:2.4.2.1UniRule annotation)
    Short name:
    PNP 1UniRule annotation
    Gene namesi
    Name:deoD1UniRule annotation
    Ordered Locus Names:VC_2347
    OrganismiVibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
    Taxonomic identifieri243277 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
    ProteomesiUP000000584: Chromosome 1

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 241241Purine nucleoside phosphorylase DeoD-type 1PRO_0000063169Add
    BLAST

    Interactioni

    Subunit structurei

    Homohexamer.UniRule annotation

    Protein-protein interaction databases

    STRINGi243277.VC2347.

    Structurei

    Secondary structure

    1
    241
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi15 – 195
    Helixi23 – 3311
    Beta strandi34 – 418
    Helixi43 – 453
    Beta strandi48 – 536
    Beta strandi56 – 616
    Helixi67 – 8115
    Beta strandi85 – 9410
    Beta strandi104 – 11310
    Helixi116 – 1205
    Turni121 – 1233
    Helixi132 – 14413
    Beta strandi150 – 1567
    Helixi166 – 1738
    Beta strandi178 – 1825
    Helixi183 – 19311
    Beta strandi196 – 20611
    Turni207 – 2093
    Helixi215 – 23723

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1VHJX-ray2.23A/B/C/D/E/F2-241[»]
    1VHWX-ray1.54A/B/C/D/E/F2-241[»]
    3OF3X-ray1.83A/B/C/D/E/F/G/H/I/J/K/L1-241[»]
    ProteinModelPortaliQ9KPM0.
    SMRiQ9KPM0. Positions 2-238.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiQ9KPM0.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the PNP/UDP phosphorylase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0813.
    KOiK03784.
    OMAiRQTTFSE.
    OrthoDBiEOG6BKJC5.

    Family and domain databases

    Gene3Di3.40.50.1580. 1 hit.
    HAMAPiMF_01627. Pur_nucleosid_phosp.
    InterProiIPR004402. DeoD-type.
    IPR018017. Nucleoside_phosphorylase.
    IPR018016. Nucleoside_phosphorylase_CS.
    IPR000845. Nucleoside_phosphorylase_d.
    [Graphical view]
    PANTHERiPTHR21234. PTHR21234. 1 hit.
    PfamiPF01048. PNP_UDP_1. 1 hit.
    [Graphical view]
    SUPFAMiSSF53167. SSF53167. 1 hit.
    TIGRFAMsiTIGR00107. deoD. 1 hit.
    PROSITEiPS01232. PNP_UDP_1. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q9KPM0-1 [UniParc]FASTAAdd to Basket

    « Hide

    MATPHINAQM GDFADVVLMP GDPLRAKYIA ENFLDNAVQV CDVRNMFGYT    50
    GTYKGRKISV MGHGMGIPSC SIYVTELIKD YGVKKIIRVG SCGAVNEGIK 100
    VRDVVIGMGA CTDSKVNRIR FKDHDFAAIA DYKMVKAAEE AAKARGIDVK 150
    VGNLFSAELF YTPDPSMFDV MDKYGIVGVE MEAAGIYGVA AEYGAKALAI 200
    CTVSDHIKTG EQTTSEERQN TFNEMIEIAL DSVLIGDQAG Y 241
    Length:241
    Mass (Da):26,124
    Last modified:October 1, 2000 - v1
    Checksum:i6E55A07972166241
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE003852 Genomic DNA. Translation: AAF95490.1.
    PIRiC82087.
    RefSeqiNP_231977.1. NC_002505.1.

    Genome annotation databases

    EnsemblBacteriaiAAF95490; AAF95490; VC_2347.
    GeneIDi2613143.
    KEGGivch:VC2347.
    PATRICi20083719. VBIVibCho83274_2234.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE003852 Genomic DNA. Translation: AAF95490.1 .
    PIRi C82087.
    RefSeqi NP_231977.1. NC_002505.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1VHJ X-ray 2.23 A/B/C/D/E/F 2-241 [» ]
    1VHW X-ray 1.54 A/B/C/D/E/F 2-241 [» ]
    3OF3 X-ray 1.83 A/B/C/D/E/F/G/H/I/J/K/L 1-241 [» ]
    ProteinModelPortali Q9KPM0.
    SMRi Q9KPM0. Positions 2-238.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 243277.VC2347.

    Protocols and materials databases

    DNASUi 2613143.
    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAF95490 ; AAF95490 ; VC_2347 .
    GeneIDi 2613143.
    KEGGi vch:VC2347.
    PATRICi 20083719. VBIVibCho83274_2234.

    Phylogenomic databases

    eggNOGi COG0813.
    KOi K03784.
    OMAi RQTTFSE.
    OrthoDBi EOG6BKJC5.

    Enzyme and pathway databases

    BioCyci VCHO:VC2347-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei Q9KPM0.

    Family and domain databases

    Gene3Di 3.40.50.1580. 1 hit.
    HAMAPi MF_01627. Pur_nucleosid_phosp.
    InterProi IPR004402. DeoD-type.
    IPR018017. Nucleoside_phosphorylase.
    IPR018016. Nucleoside_phosphorylase_CS.
    IPR000845. Nucleoside_phosphorylase_d.
    [Graphical view ]
    PANTHERi PTHR21234. PTHR21234. 1 hit.
    Pfami PF01048. PNP_UDP_1. 1 hit.
    [Graphical view ]
    SUPFAMi SSF53167. SSF53167. 1 hit.
    TIGRFAMsi TIGR00107. deoD. 1 hit.
    PROSITEi PS01232. PNP_UDP_1. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 39315 / El Tor Inaba N16961.
    2. Cited for: X-RAY CRYSTALLOGRAPHY (2.23 ANGSTROMS) OF 2-241.

    Entry informationi

    Entry nameiDEOD1_VIBCH
    AccessioniPrimary (citable) accession number: Q9KPM0
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: January 24, 2006
    Last sequence update: October 1, 2000
    Last modified: October 1, 2014
    This is version 77 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Reference proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3