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Q9KPM0

- DEOD1_VIBCH

UniProt

Q9KPM0 - DEOD1_VIBCH

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Protein

Purine nucleoside phosphorylase DeoD-type 1

Gene

deoD1

Organism
Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli

Functioni

Catalytic activityi

Purine nucleoside + phosphate = purine + alpha-D-ribose 1-phosphate.UniRule annotation
Purine deoxynucleoside + phosphate = purine + 2'-deoxy-alpha-D-ribose 1-phosphate.UniRule annotation

GO - Molecular functioni

  1. purine-nucleoside phosphorylase activity Source: TIGR

GO - Biological processi

  1. nucleobase-containing compound metabolic process Source: TIGR
  2. purine nucleoside metabolic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Enzyme and pathway databases

BioCyciVCHO:VC2347-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Purine nucleoside phosphorylase DeoD-type 1UniRule annotation (EC:2.4.2.1UniRule annotation)
Short name:
PNP 1UniRule annotation
Gene namesi
Name:deoD1UniRule annotation
Ordered Locus Names:VC_2347
OrganismiVibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Taxonomic identifieri243277 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
ProteomesiUP000000584: Chromosome 1

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 241241Purine nucleoside phosphorylase DeoD-type 1PRO_0000063169Add
BLAST

Interactioni

Subunit structurei

Homohexamer.UniRule annotation

Protein-protein interaction databases

STRINGi243277.VC2347.

Structurei

Secondary structure

1
241
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi15 – 195Combined sources
Helixi23 – 3311Combined sources
Beta strandi34 – 418Combined sources
Helixi43 – 453Combined sources
Beta strandi48 – 536Combined sources
Beta strandi56 – 616Combined sources
Helixi67 – 8115Combined sources
Beta strandi85 – 9410Combined sources
Beta strandi104 – 11310Combined sources
Helixi116 – 1205Combined sources
Turni121 – 1233Combined sources
Helixi132 – 14413Combined sources
Beta strandi150 – 1567Combined sources
Helixi166 – 1738Combined sources
Beta strandi178 – 1825Combined sources
Helixi183 – 19311Combined sources
Beta strandi196 – 20611Combined sources
Turni207 – 2093Combined sources
Helixi215 – 23723Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VHJX-ray2.23A/B/C/D/E/F2-241[»]
1VHWX-ray1.54A/B/C/D/E/F2-241[»]
3OF3X-ray1.83A/B/C/D/E/F/G/H/I/J/K/L1-241[»]
ProteinModelPortaliQ9KPM0.
SMRiQ9KPM0. Positions 2-238.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9KPM0.

Family & Domainsi

Sequence similaritiesi

Belongs to the PNP/UDP phosphorylase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0813.
KOiK03784.
OMAiRQTTFSE.
OrthoDBiEOG6BKJC5.

Family and domain databases

Gene3Di3.40.50.1580. 1 hit.
HAMAPiMF_01627. Pur_nucleosid_phosp.
InterProiIPR004402. DeoD-type.
IPR018017. Nucleoside_phosphorylase.
IPR018016. Nucleoside_phosphorylase_CS.
IPR000845. Nucleoside_phosphorylase_d.
[Graphical view]
PANTHERiPTHR21234. PTHR21234. 1 hit.
PfamiPF01048. PNP_UDP_1. 1 hit.
[Graphical view]
SUPFAMiSSF53167. SSF53167. 1 hit.
TIGRFAMsiTIGR00107. deoD. 1 hit.
PROSITEiPS01232. PNP_UDP_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9KPM0-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MATPHINAQM GDFADVVLMP GDPLRAKYIA ENFLDNAVQV CDVRNMFGYT
60 70 80 90 100
GTYKGRKISV MGHGMGIPSC SIYVTELIKD YGVKKIIRVG SCGAVNEGIK
110 120 130 140 150
VRDVVIGMGA CTDSKVNRIR FKDHDFAAIA DYKMVKAAEE AAKARGIDVK
160 170 180 190 200
VGNLFSAELF YTPDPSMFDV MDKYGIVGVE MEAAGIYGVA AEYGAKALAI
210 220 230 240
CTVSDHIKTG EQTTSEERQN TFNEMIEIAL DSVLIGDQAG Y
Length:241
Mass (Da):26,124
Last modified:October 1, 2000 - v1
Checksum:i6E55A07972166241
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE003852 Genomic DNA. Translation: AAF95490.1.
PIRiC82087.
RefSeqiNP_231977.1. NC_002505.1.

Genome annotation databases

EnsemblBacteriaiAAF95490; AAF95490; VC_2347.
GeneIDi2613143.
KEGGivch:VC2347.
PATRICi20083719. VBIVibCho83274_2234.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE003852 Genomic DNA. Translation: AAF95490.1 .
PIRi C82087.
RefSeqi NP_231977.1. NC_002505.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1VHJ X-ray 2.23 A/B/C/D/E/F 2-241 [» ]
1VHW X-ray 1.54 A/B/C/D/E/F 2-241 [» ]
3OF3 X-ray 1.83 A/B/C/D/E/F/G/H/I/J/K/L 1-241 [» ]
ProteinModelPortali Q9KPM0.
SMRi Q9KPM0. Positions 2-238.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 243277.VC2347.

Protocols and materials databases

DNASUi 2613143.
Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAF95490 ; AAF95490 ; VC_2347 .
GeneIDi 2613143.
KEGGi vch:VC2347.
PATRICi 20083719. VBIVibCho83274_2234.

Phylogenomic databases

eggNOGi COG0813.
KOi K03784.
OMAi RQTTFSE.
OrthoDBi EOG6BKJC5.

Enzyme and pathway databases

BioCyci VCHO:VC2347-MONOMER.

Miscellaneous databases

EvolutionaryTracei Q9KPM0.

Family and domain databases

Gene3Di 3.40.50.1580. 1 hit.
HAMAPi MF_01627. Pur_nucleosid_phosp.
InterProi IPR004402. DeoD-type.
IPR018017. Nucleoside_phosphorylase.
IPR018016. Nucleoside_phosphorylase_CS.
IPR000845. Nucleoside_phosphorylase_d.
[Graphical view ]
PANTHERi PTHR21234. PTHR21234. 1 hit.
Pfami PF01048. PNP_UDP_1. 1 hit.
[Graphical view ]
SUPFAMi SSF53167. SSF53167. 1 hit.
TIGRFAMsi TIGR00107. deoD. 1 hit.
PROSITEi PS01232. PNP_UDP_1. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 39315 / El Tor Inaba N16961.
  2. Cited for: X-RAY CRYSTALLOGRAPHY (2.23 ANGSTROMS) OF 2-241.

Entry informationi

Entry nameiDEOD1_VIBCH
AccessioniPrimary (citable) accession number: Q9KPM0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 24, 2006
Last sequence update: October 1, 2000
Last modified: November 26, 2014
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3