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Q9KNB2

- DEOD2_VIBCH

UniProt

Q9KNB2 - DEOD2_VIBCH

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Protein

Purine nucleoside phosphorylase DeoD-type 2

Gene

deoD2

Organism
Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

Purine nucleoside + phosphate = purine + alpha-D-ribose 1-phosphate.UniRule annotation
Purine deoxynucleoside + phosphate = purine + 2'-deoxy-alpha-D-ribose 1-phosphate.UniRule annotation

GO - Molecular functioni

  1. purine-nucleoside phosphorylase activity Source: TIGR

GO - Biological processi

  1. nucleobase-containing compound metabolic process Source: TIGR
  2. purine nucleoside metabolic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Names & Taxonomyi

Protein namesi
Recommended name:
Purine nucleoside phosphorylase DeoD-type 2UniRule annotation (EC:2.4.2.1UniRule annotation)
Short name:
PNP 2UniRule annotation
Gene namesi
Name:deoD2UniRule annotation
Ordered Locus Names:VC_A0053
OrganismiVibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Taxonomic identifieri243277 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
ProteomesiUP000000584: Chromosome 2

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 236236Purine nucleoside phosphorylase DeoD-type 2PRO_0000063170Add
BLAST

Interactioni

Subunit structurei

Homohexamer.UniRule annotation

Protein-protein interaction databases

STRINGi243277.VCA0053.

Structurei

3D structure databases

ProteinModelPortaliQ9KNB2.
SMRiQ9KNB2. Positions 2-234.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the PNP/UDP phosphorylase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0813.
KOiK03784.
OMAiCDVRSMF.
OrthoDBiEOG6BKJC5.

Family and domain databases

Gene3Di3.40.50.1580. 1 hit.
HAMAPiMF_01627. Pur_nucleosid_phosp.
InterProiIPR004402. DeoD-type.
IPR018017. Nucleoside_phosphorylase.
IPR018016. Nucleoside_phosphorylase_CS.
IPR000845. Nucleoside_phosphorylase_d.
[Graphical view]
PANTHERiPTHR21234. PTHR21234. 1 hit.
PfamiPF01048. PNP_UDP_1. 1 hit.
[Graphical view]
SUPFAMiSSF53167. SSF53167. 1 hit.
TIGRFAMsiTIGR00107. deoD. 1 hit.
PROSITEiPS01232. PNP_UDP_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9KNB2-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MATPHINAQP GDFAETVLMP GDPLRAKYIA ETFLEDVKQV CDVRSMFGFT
60 70 80 90 100
GTYKGKKVSV MGHGMGIPSC SIYVHELIAE YGVKNIIRIG SCGAVRDDVK
110 120 130 140 150
LMDVVIGMGA STDSKVNRIR FSGHDFAAIA DYDLLETAVN QARAQQVPVK
160 170 180 190 200
VGNVFSADLF YTPEPEIFEK MKKLGILGVD MEAAGIYGVA ADLGARALTI
210 220 230
LTVSDHILRG EKLSSEDRQK SFNDMMKVAL ETAINI
Length:236
Mass (Da):25,640
Last modified:January 10, 2006 - v2
Checksum:iD2DCDCC5740DC5AE
GO

Sequence cautioni

The sequence AAF95967.1 differs from that shown. Reason: Erroneous initiation. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE003853 Genomic DNA. Translation: AAF95967.1. Different initiation.
PIRiC82505.
RefSeqiNP_232454.2. NC_002506.1.

Genome annotation databases

EnsemblBacteriaiAAF95967; AAF95967; VC_A0053.
GeneIDi2612153.
KEGGivch:VCA0053.
PATRICi20084695. VBIVibCho83274_2699.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE003853 Genomic DNA. Translation: AAF95967.1 . Different initiation.
PIRi C82505.
RefSeqi NP_232454.2. NC_002506.1.

3D structure databases

ProteinModelPortali Q9KNB2.
SMRi Q9KNB2. Positions 2-234.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 243277.VCA0053.

Protocols and materials databases

DNASUi 2612153.
Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAF95967 ; AAF95967 ; VC_A0053 .
GeneIDi 2612153.
KEGGi vch:VCA0053.
PATRICi 20084695. VBIVibCho83274_2699.

Phylogenomic databases

eggNOGi COG0813.
KOi K03784.
OMAi CDVRSMF.
OrthoDBi EOG6BKJC5.

Family and domain databases

Gene3Di 3.40.50.1580. 1 hit.
HAMAPi MF_01627. Pur_nucleosid_phosp.
InterProi IPR004402. DeoD-type.
IPR018017. Nucleoside_phosphorylase.
IPR018016. Nucleoside_phosphorylase_CS.
IPR000845. Nucleoside_phosphorylase_d.
[Graphical view ]
PANTHERi PTHR21234. PTHR21234. 1 hit.
Pfami PF01048. PNP_UDP_1. 1 hit.
[Graphical view ]
SUPFAMi SSF53167. SSF53167. 1 hit.
TIGRFAMsi TIGR00107. deoD. 1 hit.
PROSITEi PS01232. PNP_UDP_1. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 39315 / El Tor Inaba N16961.

Entry informationi

Entry nameiDEOD2_VIBCH
AccessioniPrimary (citable) accession number: Q9KNB2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 10, 2006
Last sequence update: January 10, 2006
Last modified: October 1, 2014
This is version 75 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3