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Q9KNB2

- DEOD2_VIBCH

UniProt

Q9KNB2 - DEOD2_VIBCH

Protein

Purine nucleoside phosphorylase DeoD-type 2

Gene

deoD2

Organism
Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 75 (01 Oct 2014)
      Sequence version 2 (10 Jan 2006)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Purine nucleoside + phosphate = purine + alpha-D-ribose 1-phosphate.UniRule annotation
    Purine deoxynucleoside + phosphate = purine + 2'-deoxy-alpha-D-ribose 1-phosphate.UniRule annotation

    GO - Molecular functioni

    1. purine-nucleoside phosphorylase activity Source: TIGR

    GO - Biological processi

    1. nucleobase-containing compound metabolic process Source: TIGR
    2. purine nucleoside metabolic process Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Glycosyltransferase, Transferase

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Purine nucleoside phosphorylase DeoD-type 2UniRule annotation (EC:2.4.2.1UniRule annotation)
    Short name:
    PNP 2UniRule annotation
    Gene namesi
    Name:deoD2UniRule annotation
    Ordered Locus Names:VC_A0053
    OrganismiVibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
    Taxonomic identifieri243277 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
    ProteomesiUP000000584: Chromosome 2

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 236236Purine nucleoside phosphorylase DeoD-type 2PRO_0000063170Add
    BLAST

    Interactioni

    Subunit structurei

    Homohexamer.UniRule annotation

    Protein-protein interaction databases

    STRINGi243277.VCA0053.

    Structurei

    3D structure databases

    ProteinModelPortaliQ9KNB2.
    SMRiQ9KNB2. Positions 2-234.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the PNP/UDP phosphorylase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0813.
    KOiK03784.
    OMAiCDVRSMF.
    OrthoDBiEOG6BKJC5.

    Family and domain databases

    Gene3Di3.40.50.1580. 1 hit.
    HAMAPiMF_01627. Pur_nucleosid_phosp.
    InterProiIPR004402. DeoD-type.
    IPR018017. Nucleoside_phosphorylase.
    IPR018016. Nucleoside_phosphorylase_CS.
    IPR000845. Nucleoside_phosphorylase_d.
    [Graphical view]
    PANTHERiPTHR21234. PTHR21234. 1 hit.
    PfamiPF01048. PNP_UDP_1. 1 hit.
    [Graphical view]
    SUPFAMiSSF53167. SSF53167. 1 hit.
    TIGRFAMsiTIGR00107. deoD. 1 hit.
    PROSITEiPS01232. PNP_UDP_1. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q9KNB2-1 [UniParc]FASTAAdd to Basket

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    MATPHINAQP GDFAETVLMP GDPLRAKYIA ETFLEDVKQV CDVRSMFGFT    50
    GTYKGKKVSV MGHGMGIPSC SIYVHELIAE YGVKNIIRIG SCGAVRDDVK 100
    LMDVVIGMGA STDSKVNRIR FSGHDFAAIA DYDLLETAVN QARAQQVPVK 150
    VGNVFSADLF YTPEPEIFEK MKKLGILGVD MEAAGIYGVA ADLGARALTI 200
    LTVSDHILRG EKLSSEDRQK SFNDMMKVAL ETAINI 236
    Length:236
    Mass (Da):25,640
    Last modified:January 10, 2006 - v2
    Checksum:iD2DCDCC5740DC5AE
    GO

    Sequence cautioni

    The sequence AAF95967.1 differs from that shown. Reason: Erroneous initiation.

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE003853 Genomic DNA. Translation: AAF95967.1. Different initiation.
    PIRiC82505.
    RefSeqiNP_232454.2. NC_002506.1.

    Genome annotation databases

    EnsemblBacteriaiAAF95967; AAF95967; VC_A0053.
    GeneIDi2612153.
    KEGGivch:VCA0053.
    PATRICi20084695. VBIVibCho83274_2699.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE003853 Genomic DNA. Translation: AAF95967.1 . Different initiation.
    PIRi C82505.
    RefSeqi NP_232454.2. NC_002506.1.

    3D structure databases

    ProteinModelPortali Q9KNB2.
    SMRi Q9KNB2. Positions 2-234.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 243277.VCA0053.

    Protocols and materials databases

    DNASUi 2612153.
    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAF95967 ; AAF95967 ; VC_A0053 .
    GeneIDi 2612153.
    KEGGi vch:VCA0053.
    PATRICi 20084695. VBIVibCho83274_2699.

    Phylogenomic databases

    eggNOGi COG0813.
    KOi K03784.
    OMAi CDVRSMF.
    OrthoDBi EOG6BKJC5.

    Family and domain databases

    Gene3Di 3.40.50.1580. 1 hit.
    HAMAPi MF_01627. Pur_nucleosid_phosp.
    InterProi IPR004402. DeoD-type.
    IPR018017. Nucleoside_phosphorylase.
    IPR018016. Nucleoside_phosphorylase_CS.
    IPR000845. Nucleoside_phosphorylase_d.
    [Graphical view ]
    PANTHERi PTHR21234. PTHR21234. 1 hit.
    Pfami PF01048. PNP_UDP_1. 1 hit.
    [Graphical view ]
    SUPFAMi SSF53167. SSF53167. 1 hit.
    TIGRFAMsi TIGR00107. deoD. 1 hit.
    PROSITEi PS01232. PNP_UDP_1. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 39315 / El Tor Inaba N16961.

    Entry informationi

    Entry nameiDEOD2_VIBCH
    AccessioniPrimary (citable) accession number: Q9KNB2
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: January 10, 2006
    Last sequence update: January 10, 2006
    Last modified: October 1, 2014
    This is version 75 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3