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Protein
Submitted name:

Sigma-54 dependent transcriptional regulator

Gene

VC_A0117

Organism
Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotationSAAS annotation, Two-component regulatory systemSAAS annotation

Keywords - Ligandi

ATP-bindingUniRule annotationSAAS annotation, DNA-bindingUniRule annotationSAAS annotation, Nucleotide-binding

Enzyme and pathway databases

BioCyciVCHO:VCA0117-MONOMER.

Protein family/group databases

TCDBi3.A.23.1.1. the type vi symbiosis/virulence secretory pathway (visp) family.

Names & Taxonomyi

Protein namesi
Submitted name:
Sigma-54 dependent transcriptional regulatorImported
Gene namesi
Ordered Locus Names:VC_A0117Imported
OrganismiVibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)Imported
Taxonomic identifieri243277 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
Proteomesi
  • UP000000584 Componenti: Chromosome 2

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi243277.VCA0117.

Structurei

3D structure databases

ProteinModelPortaliQ9KN48.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini193 – 422230Sigma-54 factor interactionInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 sigma-54 factor interaction domain.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108JU7. Bacteria.
COG1221. LUCA.
KOiK11908.
OMAiADSDAFH.
OrthoDBiEOG6WHNMG.

Family and domain databases

Gene3Di1.10.10.60. 2 hits.
3.40.50.300. 1 hit.
InterProiIPR003593. AAA+_ATPase.
IPR009057. Homeodomain-like.
IPR002197. HTH_Fis.
IPR027417. P-loop_NTPase.
IPR002078. Sigma_54_int.
IPR025662. Sigma_54_int_dom_ATP-bd_1.
IPR025943. Sigma_54_int_dom_ATP-bd_2.
IPR025944. Sigma_54_int_dom_CS.
[Graphical view]
PfamiPF02954. HTH_8. 1 hit.
PF00158. Sigma54_activat. 1 hit.
[Graphical view]
PRINTSiPR01590. HTHFIS.
SMARTiSM00382. AAA. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF52540. SSF52540. 1 hit.
PROSITEiPS00675. SIGMA54_INTERACT_1. 1 hit.
PS00676. SIGMA54_INTERACT_2. 1 hit.
PS00688. SIGMA54_INTERACT_3. 1 hit.
PS50045. SIGMA54_INTERACT_4. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9KN48-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSQWLAFATQ LVGVRKSHQL ALQFVDLLTQ GLDLSDSLLL LPSSDGRLLV
60 70 80 90 100
PHDPQRQFAW SVTDFDVPFA HVLQSSNAMH LTAEELVFWQ SNRTFSQLTS
110 120 130 140 150
RVGMFDSVWI QPLPMDTRQV HSILLLMGES HGIVSAFENA DFLKFIEVFS
160 170 180 190 200
QQWSLLNDME REEQRRLELK QSLTDIERDS AQRSLANALS RTLIGESAAM
210 220 230 240 250
QKLREQIVSA ANSQLSVMVQ GETGTGKELV AAAVHELSSR KSAPFVAINC
260 270 280 290 300
AAIPEHLLES ELFGYCKGAF SGADSDKQGL IAQANGGTLF LDEIGDMPLT
310 320 330 340 350
LQAKLLRVLE SRTFRPLGGK QELSSDFRLV SATHVNLLDQ VRKKEFRQDL
360 370 380 390 400
YYRLFQYPIT LPRLAARLED IELLSEHFVR VFNLQHNTRI RGLNYRAIDC
410 420 430 440 450
LKQYDFPGNV RELKHLIEFG CAQTADGTQV EASCFAHRLQ TLPCLAPEAT
460 470 480 490 500
PVAVSVETEN VDLEPSVALA GEPNFAVIHD LKQAVSQFEA LIISERLNRF
510 520 530
AGDRAKAAKS LGIPKRTLAY KCLKLEIKTP
Length:530
Mass (Da):59,260
Last modified:October 1, 2000 - v1
Checksum:i6E8027DBCFC42904
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE003853 Genomic DNA. Translation: AAF96031.1.
PIRiH82499.
RefSeqiNP_232518.1. NC_002506.1.
WP_000084793.1. NC_002506.1.

Genome annotation databases

EnsemblBacteriaiAAF96031; AAF96031; VC_A0117.
GeneIDi2612409.
KEGGivch:VCA0117.
PATRICi20084813. VBIVibCho83274_2758.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE003853 Genomic DNA. Translation: AAF96031.1.
PIRiH82499.
RefSeqiNP_232518.1. NC_002506.1.
WP_000084793.1. NC_002506.1.

3D structure databases

ProteinModelPortaliQ9KN48.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243277.VCA0117.

Protein family/group databases

TCDBi3.A.23.1.1. the type vi symbiosis/virulence secretory pathway (visp) family.

Protocols and materials databases

DNASUi2612409.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAF96031; AAF96031; VC_A0117.
GeneIDi2612409.
KEGGivch:VCA0117.
PATRICi20084813. VBIVibCho83274_2758.

Phylogenomic databases

eggNOGiENOG4108JU7. Bacteria.
COG1221. LUCA.
KOiK11908.
OMAiADSDAFH.
OrthoDBiEOG6WHNMG.

Enzyme and pathway databases

BioCyciVCHO:VCA0117-MONOMER.

Family and domain databases

Gene3Di1.10.10.60. 2 hits.
3.40.50.300. 1 hit.
InterProiIPR003593. AAA+_ATPase.
IPR009057. Homeodomain-like.
IPR002197. HTH_Fis.
IPR027417. P-loop_NTPase.
IPR002078. Sigma_54_int.
IPR025662. Sigma_54_int_dom_ATP-bd_1.
IPR025943. Sigma_54_int_dom_ATP-bd_2.
IPR025944. Sigma_54_int_dom_CS.
[Graphical view]
PfamiPF02954. HTH_8. 1 hit.
PF00158. Sigma54_activat. 1 hit.
[Graphical view]
PRINTSiPR01590. HTHFIS.
SMARTiSM00382. AAA. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF52540. SSF52540. 1 hit.
PROSITEiPS00675. SIGMA54_INTERACT_1. 1 hit.
PS00676. SIGMA54_INTERACT_2. 1 hit.
PS00688. SIGMA54_INTERACT_3. 1 hit.
PS50045. SIGMA54_INTERACT_4. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 39315 / El Tor Inaba N16961Imported.

Entry informationi

Entry nameiQ9KN48_VIBCH
AccessioniPrimary (citable) accession number: Q9KN48
Entry historyi
Integrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: October 1, 2000
Last modified: March 16, 2016
This is version 101 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.