Activated by transcription factor SsrB

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Q9KIJ7 (Q9KIJ7_SALTY) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 63. History...

Clusters with 100%, 90%, 50% identity |

Third-party data

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Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

Names and origin

Protein names

Submitted name:
Activated by transcription factor SsrB EMBL AAL23246.1

Submitted name:
SrfJ EMBL AAF74576.1

Gene names

Name:	srfJ EMBL AAL23246.1
Ordered Locus Names:	STM4426

Organism

Salmonella typhimurium EMBL AAF74576.1

Taxonomic identifier

90371 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Salmonella

Protein attributes

Sequence length	447 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Technical term	3D-structure PDB 2WNW Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro lysosome organization Inferred from electronic annotation. Source: InterPro sphingolipid metabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	lysosome Inferred from electronic annotation. Source: InterPro
Molecular function	cation binding Inferred from electronic annotation. Source: InterPro glucosylceramidase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

Sequence

Length

Mass (Da)

Tools

Q9KIJ7 [UniParc].

Last modified October 1, 2000. Version 1.
Checksum: F64B3803DFB8D03C
Show »

FASTA

447

50,865

        10         20         30         40         50         60 
MKGRLISSDP YRQQFLVERA VSFSHRQRDC SELISVLPRH ALQQIDGFGG SFTEGAGVVF 

        70         80         90        100        110        120 
NSMSEKTKAQ FLSLYFSAQE HNYTLARMPI QSCDFSLGNY AYVDSSADLQ QGRLSFSRDE 

       130        140        150        160        170        180 
AHLIPLISGA LRLNPHMKLM ASPWSPPAFM KTNNDMNGGG KLRRECYADW ADIIINYLLE 

       190        200        210        220        230        240 
YRRHGINVQA LSVQNEPVAV KTWDSCLYSV EEETAFAVQY LRPRLARQGM DEMEIYIWDH 

       250        260        270        280        290        300 
DKDGLVDWAE LAFADEANYK GINGLAFHWY TGDHFSQIQY LAQCLPDKKL LFSEGCVPME 

       310        320        330        340        350        360 
SDAGSQIRHW HTYLHDMIGN FKSGCSGFID WNLLLNSEGG PNHQGNLCEA PIQYDAQNDV 

       370        380        390        400        410        420 
LRRNHSWYGI GHFCRYVRPG ARVMLSSSYD NLLEEVGFVN PDGERVLVVY NRDVQERRCR 

       430        440 
VLDGDKEIAL TLPPSGASTL LWRQESI

« Hide

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Salmonella SsrB activates a global regulon of horizontally acquired genes." Worley M.J., Ching K.H., Heffron F. Mol. Microbiol. 36:749-761(2000) [PubMed: 10844662] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: 14028s EMBL AAF74576.1.
[2]	"Complete genome sequence of Salmonella enterica serovar Typhimurium LT2." McClelland M., Sanderson K.E., Spieth J., Clifton S.W., Latreille P., Courtney L., Porwollik S., Ali J., Dante M., Du F., Hou S., Layman D., Leonard S., Nguyen C., Scott K., Holmes A., Grewal N., Mulvaney E. Wilson R.K. Nature 413:852-856(2001) [PubMed: 11677609] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: LT2 / SGSC1412 / ATCC 700720.
[3]	"Crystal structure of the Salmonella enterica serovar typhimurium virulence factor SrfJ, a glycoside hydrolase family enzyme." Kim Y.G., Kim J.H., Kim K.J. J. Bacteriol. 191:6550-6554(2009) [PubMed: 19717598] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (2.00 ANGSTROMS).

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AF231759 Genomic DNA. Translation: AAF74576.1.
AE006468 Genomic DNA. Translation: AAL23246.1.

RefSeq

NP_463287.1. NC_003197.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
2WNW	X-ray	2.00	A/B	1-447	[»]

ProteinModelPortal

Q9KIJ7.

ModBase

Search...

Protein family/group databases

CAZy

GH30. Glycoside Hydrolase Family 30.

Proteomic databases

PRIDE

Q9KIJ7.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

GeneID

1255952.

GenomeReviews

Gene locus STM4426 in contig AE006468_GR.

KEGG

stm:STM4426.

NMPDR

fig|99287.1.peg.4259.

PATRIC

32387781. VBISalEnt20916_4654.

Phylogenomic databases

HOGENOM

HBG380604.

OMA

WSAPAFM.

ProtClustDB

CLSK2302030.

Enzyme and pathway databases

BioCyc

STYP99287:STM4426-MONOMER.

Family and domain databases

InterPro

IPR018247. EF_Hand_1_Ca_BS.
IPR013780. Glyco_hydro_13_b.
IPR001139. Glyco_hydro_30.
IPR013781. Glyco_hydro_subgr_catalytic.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]

Gene3D

G3DSA:2.60.40.1180. Glyco_hydro_13_b. 1 hit.
G3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit.

K01201.

PANTHER

PTHR11069. Glyco_hydro_30. 1 hit.

Pfam

PF02055. Glyco_hydro_30. 1 hit.
[Graphical view]

PRINTS

PR00843. GLHYDRLASE30.

SUPFAM

SSF51445. Glyco_hydro_cat. 1 hit.

PROSITE

PS00018. EF_HAND_1. 1 hit.
[Graphical view]

ProtoNet

Search...

Entry information

Entry name

Q9KIJ7_SALTY

Accession

Primary (citable) accession number: Q9KIJ7
Secondary accession number(s): Q7CP86

Entry history

Integrated into UniProtKB/TrEMBL:	October 1, 2000
Last sequence update:	October 1, 2000
Last modified:	December 14, 2011
This is version 63 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info

Preferred order of sections

Names and origin

Protein attributes

Ontologies

Sequences

References

Cross-references

Sequence databases

3D structure databases

Protein family/group databases

Proteomic databases

Protocols and materials databases

Genome annotation databases

Phylogenomic databases

Enzyme and pathway databases

Family and domain databases

Entry information