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Q9KFR4 (Q9KFR4_BACHD) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 86. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:BH0413 EMBL BAB04132.1
OrganismBacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) [Complete proteome] [HAMAP] EMBL BAB04132.1
Taxonomic identifier272558 [NCBI]
Taxonomic lineageBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus

Protein attributes

Sequence length958 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Region788 – 7903Glucose binding
Region841 – 8422Glucose binding
Region858 – 8603Sulfate 3 binding
Region872 – 8765Glucose binding PDB 2C3W
Region914 – 9174Sulfate 4 binding PDB 2C3X
Region930 – 9378Glucose binding PDB 2C3W PDB 2C3X

Sites

Metal binding7801Cadmium 1 PDB 2C3G
Metal binding8131Cadmium 1 PDB 2C3G
Metal binding8171Cadmium 2; via pros nitrogen PDB 2C3G
Metal binding8541Cadmium 3 PDB 2C3G
Metal binding8581Cadmium 3; via tele nitrogen PDB 2C3G
Binding site7841Sulfate 2; via amide nitrogen
Binding site8011Glucose
Binding site8141Sulfate 1
Binding site8361Glucose
Binding site8821Glucose PDB 2C3W PDB 2C3X
Binding site8901Glucose PDB 2C3W PDB 2C3X
Binding site8901Sulfate 5 PDB 2C3W
Binding site9201Sulfate 5 PDB 2C3W
Binding site9491Glucose PDB 2C3W

Sequences

Sequence LengthMass (Da)Tools
Q9KFR4 [UniParc].

Last modified October 1, 2000. Version 1.
Checksum: C366087A167F024E

FASTA958107,162
        10         20         30         40         50         60 
MNASYVKKVS LYLLLSFVIT LPLFSPTFSI NSVDASQGGE QQSFSWDNAT VYFAITDRFH 

        70         80         90        100        110        120 
DGNPSNNQSY GRPQEDAWGQ NIGTFHGGDL QGLTDKLNEG YFTELGINAI WITAPYEQVH 

       130        140        150        160        170        180 
GWVGGGSDGD FAHYAYHGYY ALDYTMIDQN MGTVEDMREF VHTAHEQGIR VVLDVVMNHP 

       190        200        210        220        230        240 
GYNTIKDMHE YGFGNPGVSE HWTPGQGQNW HDVHQQINYE DAGAWRHWWG PWIRAGIAGY 

       250        260        270        280        290        300 
ESCGNSEITM CLAGLPDFRT ELTHSVGLPP LLETKWNQER QGGYEDWIVP AANDLRRDLG 

       310        320        330        340        350        360 
VAPADYIVKW LSAWVEEFGI DGFRVDTAKH VELSRWQQLK DAANEALWKW REENPEAPGA 

       370        380        390        400        410        420 
NWTDDFWMVG EVWGHGVGRS EYFDHGFDSV INFTFQGEHG NGPAYRLDTM ESTFSRYANA 

       430        440        450        460        470        480 
INTDSTFNVL SYLSQHDTQL YPRERLIDGG TYLMLLPGGV QVFYGDETAR PFGPTGSDPH 

       490        500        510        520        530        540 
QGTRSSMNWD SVNEEVLHHW QKMGQFRSNH LAVGAGEHRQ IAASPYTFSR TYVEGDVDDR 

       550        560        570        580        590        600 
VVVVVGASGE TTIDVSSVFS DGQQVRDFYT GNVTVVENGH VTFPAHRNGV ILIERAGDLL 

       610        620        630        640        650        660 
PSVSASPAGG EFDREQQEVI LYVQHAEWGA YTIDGSDPKE EGTAFANGDV ITVGRELNID 

       670        680        690        700        710        720 
ESLTLRLYAE NETGEAKAEF TFTKVPAYPQ VFADPPGGTF AGDTLKVTLH TRNVEGGTYS 

       730        740        750        760        770        780 
IDGSDEQAFT DGDEIMIGKG IEAGSETTLQ LKAENEFGTI EETYTYTKST GLTIYFKKPD 

       790        800        810        820        830        840 
SWGTPHLYYY DTNPKVDEPT WSEAPEMEHY EGDWYTHTIE GVESVRLLFK DRGTNQWPGP 

       850        860        870        880        890        900 
GEPGFFRDQD GWFDGEWHVD RPGDATDITI YYKTGWTHPH IHYSLNQGAW TTLPGVPLTK 

       910        920        930        940        950 
SEYEGYVKVT IEAEEGSQLR AAFNNGSGQW DNNQGRDYDF SSGVHTLADG RILSGTPK 

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence of the alkaliphilic bacterium Bacillus halodurans and genomic sequence comparison with Bacillus subtilis."
Takami H., Nakasone K., Takaki Y., Maeno G., Sasaki R., Masui N., Fuji F., Hirama C., Nakamura Y., Ogasawara N., Kuhara S., Horikoshi K.
Nucleic Acids Res. 28:4317-4331(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125.
[2]"A structural and functional analysis of alpha-glucan recognition by family 25 and 26 carbohydrate-binding modules reveals a conserved mode of starch recognition."
Boraston A.B., Healey M., Klassen J., Ficko-Blean E., Lammerts van Bueren A., Law V.
J. Biol. Chem. 281:587-598(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (1.39 ANGSTROMS) OF 863-958 IN COMPLEX WITH CADMIUM; GLUCOSE AND SULFATE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BA000004 Genomic DNA. Translation: BAB04132.1.
PIRE83701.
RefSeqNP_241279.1. NC_002570.2.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
2C3GX-ray2.00A771-863[»]
2C3HX-ray2.24A/B/C/D/E/F/G/H771-863[»]
2C3VX-ray1.39A/B863-958[»]
2C3WX-ray1.81A/B/C/D863-958[»]
2C3XX-ray2.70A/B863-958[»]
ProteinModelPortalQ9KFR4.
SMRQ9KFR4. Positions 771-862, 864-958.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING272558.BH0413.

Protein family/group databases

CAZyCBM25. Carbohydrate-Binding Module Family 25.
CBM26. Carbohydrate-Binding Module Family 26.
GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAB04132; BAB04132; BAB04132.
GeneID892065.
KEGGbha:BH0413.
PATRIC18937748. VBIBacHal18977_0433.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01176.
OMATELTHSV.
OrthoDBEOG65QWH3.
ProtClustDBCLSK2565252.

Enzyme and pathway databases

BioCycBHAL272558:GJC5-450-MONOMER.

Family and domain databases

Gene3D3.20.20.80. 2 hits.
InterProIPR005085. CBM_fam25.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
PF03423. CBM_25. 1 hit.
[Graphical view]
SMARTSM00642. Aamy. 1 hit.
SM01066. CBM_25. 1 hit.
[Graphical view]
SUPFAMSSF51445. SSF51445. 2 hits.
ProtoNetSearch...

Other

EvolutionaryTraceQ9KFR4.

Entry information

Entry nameQ9KFR4_BACHD
AccessionPrimary (citable) accession number: Q9KFR4
Entry history
Integrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: October 1, 2000
Last modified: November 13, 2013
This is version 86 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)