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Q9KFR4

- Q9KFR4_BACHD

UniProt

Q9KFR4 - Q9KFR4_BACHD

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Protein
Submitted name:

Alpha-amylase G-6

Gene
BH0413
Organism
Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
Status
Unreviewed - Annotation score: 2 out of 5 - Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi780 – 7801Cadmium 1Imported
Binding sitei784 – 7841Sulfate 2; via amide nitrogen
Binding sitei801 – 8011GlucoseImported
Metal bindingi813 – 8131Cadmium 1Imported
Binding sitei814 – 8141Sulfate 1
Metal bindingi817 – 8171Cadmium 2; via pros nitrogenImported
Binding sitei836 – 8361GlucoseImported
Metal bindingi854 – 8541Cadmium 3Imported
Metal bindingi858 – 8581Cadmium 3; via tele nitrogenImported
Binding sitei882 – 8821GlucoseImported
Binding sitei890 – 8901GlucoseImported
Binding sitei949 – 9491GlucoseImported

GO - Molecular functioni

  1. catalytic activity Source: InterPro
  2. metal ion binding Source: UniProtKB-KW
  3. starch binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
Complete GO annotation...

Keywords - Ligandi

CadmiumImported, Metal-bindingImported

Enzyme and pathway databases

BioCyciBHAL272558:GJC5-450-MONOMER.

Protein family/group databases

CAZyiCBM25. Carbohydrate-Binding Module Family 25.
CBM26. Carbohydrate-Binding Module Family 26.
GH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha-amylase G-6Imported
Gene namesi
Ordered Locus Names:BH0413Imported
OrganismiBacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)Imported
Taxonomic identifieri272558 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
ProteomesiUP000001258: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi272558.BH0413.

Structurei

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2C3GX-ray2.00A771-863[»]
2C3HX-ray2.24A/B/C/D/E/F/G/H771-863[»]
2C3VX-ray1.39A/B863-958[»]
2C3WX-ray1.81A/B/C/D863-958[»]
2C3XX-ray2.70A/B863-958[»]
ProteinModelPortaliQ9KFR4.
SMRiQ9KFR4. Positions 771-862, 864-958.

Miscellaneous databases

EvolutionaryTraceiQ9KFR4.

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni788 – 7903Glucose bindingImported
Regioni841 – 8422Glucose bindingImported
Regioni858 – 8603Sulfate 3 binding
Regioni872 – 8765Glucose bindingImported
Regioni930 – 9378Glucose bindingImported

Phylogenomic databases

KOiK01176.
OMAiTELTHSV.
OrthoDBiEOG65QWH3.

Family and domain databases

Gene3Di3.20.20.80. 2 hits.
InterProiIPR005085. CBM_fam25.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF03423. CBM_25. 1 hit.
[Graphical view]
SMARTiSM00642. Aamy. 1 hit.
SM01066. CBM_25. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.

Sequencei

Sequence statusi: Complete.

Q9KFR4-1 [UniParc]FASTAAdd to Basket

« Hide

MNASYVKKVS LYLLLSFVIT LPLFSPTFSI NSVDASQGGE QQSFSWDNAT    50
VYFAITDRFH DGNPSNNQSY GRPQEDAWGQ NIGTFHGGDL QGLTDKLNEG 100
YFTELGINAI WITAPYEQVH GWVGGGSDGD FAHYAYHGYY ALDYTMIDQN 150
MGTVEDMREF VHTAHEQGIR VVLDVVMNHP GYNTIKDMHE YGFGNPGVSE 200
HWTPGQGQNW HDVHQQINYE DAGAWRHWWG PWIRAGIAGY ESCGNSEITM 250
CLAGLPDFRT ELTHSVGLPP LLETKWNQER QGGYEDWIVP AANDLRRDLG 300
VAPADYIVKW LSAWVEEFGI DGFRVDTAKH VELSRWQQLK DAANEALWKW 350
REENPEAPGA NWTDDFWMVG EVWGHGVGRS EYFDHGFDSV INFTFQGEHG 400
NGPAYRLDTM ESTFSRYANA INTDSTFNVL SYLSQHDTQL YPRERLIDGG 450
TYLMLLPGGV QVFYGDETAR PFGPTGSDPH QGTRSSMNWD SVNEEVLHHW 500
QKMGQFRSNH LAVGAGEHRQ IAASPYTFSR TYVEGDVDDR VVVVVGASGE 550
TTIDVSSVFS DGQQVRDFYT GNVTVVENGH VTFPAHRNGV ILIERAGDLL 600
PSVSASPAGG EFDREQQEVI LYVQHAEWGA YTIDGSDPKE EGTAFANGDV 650
ITVGRELNID ESLTLRLYAE NETGEAKAEF TFTKVPAYPQ VFADPPGGTF 700
AGDTLKVTLH TRNVEGGTYS IDGSDEQAFT DGDEIMIGKG IEAGSETTLQ 750
LKAENEFGTI EETYTYTKST GLTIYFKKPD SWGTPHLYYY DTNPKVDEPT 800
WSEAPEMEHY EGDWYTHTIE GVESVRLLFK DRGTNQWPGP GEPGFFRDQD 850
GWFDGEWHVD RPGDATDITI YYKTGWTHPH IHYSLNQGAW TTLPGVPLTK 900
SEYEGYVKVT IEAEEGSQLR AAFNNGSGQW DNNQGRDYDF SSGVHTLADG 950
RILSGTPK 958
Length:958
Mass (Da):107,162
Last modified:October 1, 2000 - v1
Checksum:iC366087A167F024E
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BA000004 Genomic DNA. Translation: BAB04132.1.
PIRiE83701.
RefSeqiNP_241279.1. NC_002570.2.

Genome annotation databases

EnsemblBacteriaiBAB04132; BAB04132; BAB04132.
GeneIDi892065.
KEGGibha:BH0413.
PATRICi18937748. VBIBacHal18977_0433.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BA000004 Genomic DNA. Translation: BAB04132.1 .
PIRi E83701.
RefSeqi NP_241279.1. NC_002570.2.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
2C3G X-ray 2.00 A 771-863 [» ]
2C3H X-ray 2.24 A/B/C/D/E/F/G/H 771-863 [» ]
2C3V X-ray 1.39 A/B 863-958 [» ]
2C3W X-ray 1.81 A/B/C/D 863-958 [» ]
2C3X X-ray 2.70 A/B 863-958 [» ]
ProteinModelPortali Q9KFR4.
SMRi Q9KFR4. Positions 771-862, 864-958.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 272558.BH0413.

Protein family/group databases

CAZyi CBM25. Carbohydrate-Binding Module Family 25.
CBM26. Carbohydrate-Binding Module Family 26.
GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAB04132 ; BAB04132 ; BAB04132 .
GeneIDi 892065.
KEGGi bha:BH0413.
PATRICi 18937748. VBIBacHal18977_0433.

Phylogenomic databases

KOi K01176.
OMAi TELTHSV.
OrthoDBi EOG65QWH3.

Enzyme and pathway databases

BioCyci BHAL272558:GJC5-450-MONOMER.

Miscellaneous databases

EvolutionaryTracei Q9KFR4.

Family and domain databases

Gene3Di 3.20.20.80. 2 hits.
InterProi IPR005085. CBM_fam25.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
PF03423. CBM_25. 1 hit.
[Graphical view ]
SMARTi SM00642. Aamy. 1 hit.
SM01066. CBM_25. 1 hit.
[Graphical view ]
SUPFAMi SSF51445. SSF51445. 2 hits.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Complete genome sequence of the alkaliphilic bacterium Bacillus halodurans and genomic sequence comparison with Bacillus subtilis."
    Takami H., Nakasone K., Takaki Y., Maeno G., Sasaki R., Masui N., Fuji F., Hirama C., Nakamura Y., Ogasawara N., Kuhara S., Horikoshi K.
    Nucleic Acids Res. 28:4317-4331(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125.
  2. "A structural and functional analysis of alpha-glucan recognition by family 25 and 26 carbohydrate-binding modules reveals a conserved mode of starch recognition."
    Boraston A.B., Healey M., Klassen J., Ficko-Blean E., Lammerts van Bueren A., Law V.
    J. Biol. Chem. 281:587-598(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.39 ANGSTROMS) OF 863-958 IN COMPLEX WITH CADMIUM AND GLUCOSE.

Entry informationi

Entry nameiQ9KFR4_BACHD
AccessioniPrimary (citable) accession number: Q9KFR4
Entry historyi
Integrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: October 1, 2000
Last modified: September 3, 2014
This is version 89 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureImported, Complete proteome

External Data

Dasty 3

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