Glycerol-3-phosphate dehydrogenase - Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)

Preferred order of sections

Names and origin

Protein names

Submitted name:
Glycerol-3-phosphate dehydrogenase EMBL BAB04814.1

Gene names

Name:	glpD EMBL BAB04814.1
Ordered Locus Names:	BH1095

Organism

Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) [Complete proteome] [HAMAP]

Taxonomic identifier

272558 [NCBI]

Taxonomic lineage

Bacteria › Firmicutes › Bacillales › Bacillaceae › Bacillus

Protein attributes

Sequence length	553 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Cofactor	FAD By similarity. RuleBase RU003892
Sequence similarities	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family. RuleBase RU003891

Ontologies

Keywords
Ligand	FAD PDB 3DA1 Flavoprotein RuleBase RU003892 PDB 3DA1 Nucleotide-binding PDB 3DA1
Molecular function	Oxidoreductase RuleBase RU003892
Technical term	3D-structure PDB 3DA1 Complete proteome
Gene Ontology (GO)
Biological process	glycerol-3-phosphate metabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	glycerol-3-phosphate dehydrogenase complex Inferred from electronic annotation. Source: InterPro
Molecular function	glycerol-3-phosphate dehydrogenase activity Inferred from electronic annotation. Source: InterPro nucleotide binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Regions

Nucleotide binding

28 – 29

2

FAD PDB 3DA1

Nucleotide binding

48 – 49

2

FAD PDB 3DA1

Nucleotide binding

54 – 57

4

FAD PDB 3DA1

Nucleotide binding

61 – 63

3

FAD PDB 3DA1

Sites

Binding site

193

1

FAD; via amide nitrogen and carbonyl oxygen PDB 3DA1

Binding site

231

1

FAD PDB 3DA1

Binding site

375

1

FAD PDB 3DA1

Sequences

Sequence

Length

Mass (Da)

Tools

Q9KDW6 [UniParc].

Last modified October 1, 2000. Version 1.
Checksum: 7A21E8BF9AF39C40
Show »

FASTA

553

62,041

        10         20         30         40         50         60 
MFSAKKRDKC IGEMSEKQLD LLVIGGGITG AGIALDAQVR GIQTGLVEMN DFASGTSSRS 

        70         80         90        100        110        120 
TKLVHGGLRY LKQFEIKLVA EVGKERAIVY ENAPHVTTPE WMLLPIFKDG TFGKFSTSLG 

       130        140        150        160        170        180 
LKVYDYLADV RKDERRYMLN EKQTLEKEPL LRKENLKGGG IYVEYRTDDA RLTLEIMKEA 

       190        200        210        220        230        240 
VARGAVALNY MKVESFIYDQ GKVVGVVAKD RLTDTTHTIY AKKVVNAAGP WVDTLREKDR 

       250        260        270        280        290        300 
SKHGKYLKLS KGVHLVVDQS RFPLRQAVYF DTESDGRMIF AIPREGKTYI GTTDTFYDKD 

       310        320        330        340        350        360 
IASPRMTVED RDYILAAANY MFPSLNLTAD DVESSWAGLR PLIHEEGKKA SEISRKDEIF 

       370        380        390        400        410        420 
FSDSGLISIA GGKLTGYRKM AERTVDAVAQ GLNVNEPCTT AAIRLSGGLA EGAQGFPRFL 

       430        440        450        460        470        480 
DEASRKGAKL GFDADEVRRL AKLYGSNVDH VLNYAYEGKE EAEHYGLPAL LLGQLQYGVE 

       490        500        510        520        530        540 
QEMVATPLDF FVRRTGALFF NISLVHQWKE AVLRWMAEEF SWTEEEKTRF QNELETELKM 

       550 
AVDPLFQVEP TTV

« Hide

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete genome sequence of the alkaliphilic bacterium Bacillus halodurans and genomic sequence comparison with Bacillus subtilis." Takami H., Nakasone K., Takaki Y., Maeno G., Sasaki R., Masui N., Fuji F., Hirama C., Nakamura Y., Ogasawara N., Kuhara S., Horikoshi K. Nucleic Acids Res. 28:4317-4331(2000) [PubMed: 11058132] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125.
[2]	"X-Ray structure of the glycerol-3-phosphate dehydrogenase from Bacillus halodurans complexed with FAD. Northeast Structural Genomics Consortium target BhR167." Kuzin A.P., Abashidze M., Seetharaman J., Wang D., Janjua H., Owens L., Xiao R., Nair R., Baran M.C., Acton T.B., Rost B., Montelione G.T., Hunt J.F., Tong L. Submitted (MAY-2008) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (2.70 ANGSTROMS) IN COMPLEX WITH FAD.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

BA000004 Genomic DNA. Translation: BAB04814.1.

PIR

G83786.

RefSeq

NP_241961.1. NC_002570.2.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
3DA1	X-ray	2.70	A	1-553	[»]

ProteinModelPortal

Q9KDW6.

ModBase

Search...

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

EnsemblBacteria

EBBACT00000052732; EBBACP00000051371; EBBACG00000052723.

GeneID

892058.

GenomeReviews

Gene locus BH1095 in contig BA000004_GR.

KEGG

bha:BH1095.

NMPDR

fig|272558.1.peg.1095.

PATRIC

18939250. VBIBacHal18977_1143.

Organism-specific databases

CMR

Search...

Phylogenomic databases

GeneTree

EBGT00050000001494.

HOGENOM

HBG720894.

OMA

EWMLLPI.

PhylomeDB

Q9KDW6.

ProtClustDB

CLSK2748949.

Family and domain databases

InterPro

IPR006076. FAD-dep_OxRdtase.
IPR000447. G3P_DH_FAD-dep.
[Graphical view]

KO

K00111.

Pfam

PF01266. DAO. 1 hit.
[Graphical view]

PRINTS

PR01001. FADG3PDH.

PROSITE

PS00977. FAD_G3PDH_1. 1 hit.
PS00978. FAD_G3PDH_2. 1 hit.
[Graphical view]

ProtoNet

Search...

Entry information

Entry name

Q9KDW6_BACHD

Accession

Primary (citable) accession number: Q9KDW6

Entry history

Integrated into UniProtKB/TrEMBL:	October 1, 2000
Last sequence update:	October 1, 2000
Last modified:	January 25, 2012
This is version 66 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)