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Q9KCL9

- RHAA_BACHD

UniProt

Q9KCL9 - RHAA_BACHD

Protein

L-rhamnose isomerase

Gene

rhaA

Organism
Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 83 (01 Oct 2014)
      Sequence version 1 (01 Oct 2000)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    L-rhamnopyranose = L-rhamnulose.UniRule annotation

    Cofactori

    Binds 1 manganese ion per subunit.UniRule annotation

    Pathwayi

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi261 – 2611ManganeseUniRule annotation
    Metal bindingi293 – 2931ManganeseUniRule annotation
    Metal bindingi295 – 2951ManganeseUniRule annotation

    GO - Molecular functioni

    1. L-rhamnose isomerase activity Source: UniProtKB-HAMAP
    2. manganese ion binding Source: UniProtKB-HAMAP

    GO - Biological processi

    1. rhamnose catabolic process Source: UniProtKB-UniPathway

    Keywords - Molecular functioni

    Isomerase

    Keywords - Biological processi

    Rhamnose metabolism

    Keywords - Ligandi

    Manganese, Metal-binding

    Enzyme and pathway databases

    BioCyciBHAL272558:GJC5-1636-MONOMER.
    UniPathwayiUPA00541; UER00601.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    L-rhamnose isomeraseUniRule annotation (EC:5.3.1.14UniRule annotation)
    Gene namesi
    Name:rhaAUniRule annotation
    Ordered Locus Names:BH1552
    OrganismiBacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
    Taxonomic identifieri272558 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
    ProteomesiUP000001258: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 418418L-rhamnose isomerasePRO_0000090549Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi272558.BH1552.

    Structurei

    Secondary structure

    1
    418
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Helixi6 – 1510
    Turni16 – 183
    Helixi21 – 3010
    Beta strandi34 – 363
    Helixi37 – 393
    Turni40 – 434
    Helixi70 – 8112
    Beta strandi84 – 863
    Beta strandi89 – 935
    Helixi94 – 963
    Beta strandi100 – 1023
    Helixi106 – 1083
    Helixi111 – 1144
    Helixi115 – 12410
    Beta strandi127 – 1315
    Beta strandi135 – 1373
    Helixi138 – 1403
    Beta strandi145 – 1473
    Helixi151 – 17525
    Beta strandi179 – 1835
    Beta strandi188 – 1914
    Helixi197 – 21014
    Turni217 – 2193
    Beta strandi220 – 2256
    Beta strandi235 – 2395
    Helixi241 – 25010
    Beta strandi254 – 2585
    Helixi268 – 2703
    Helixi272 – 2754
    Turni276 – 2783
    Beta strandi282 – 2865
    Beta strandi290 – 2934
    Helixi302 – 31312
    Turni317 – 3193
    Beta strandi320 – 3245
    Beta strandi329 – 3313
    Helixi333 – 35220
    Helixi356 – 3649
    Helixi368 – 37710
    Helixi378 – 3803
    Helixi383 – 39311
    Turni399 – 4013
    Helixi402 – 41211
    Turni413 – 4164

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    3P14X-ray2.51A/B/C/D1-418[»]
    3UU0X-ray2.70A/B/C/D1-418[»]
    3UVAX-ray2.69A/B/C/D1-418[»]
    3UXIX-ray2.73A/B/C/D1-418[»]
    ProteinModelPortaliQ9KCL9.
    SMRiQ9KCL9. Positions 2-417.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiQ9KCL9.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the rhamnose isomerase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG4806.
    HOGENOMiHOG000269679.
    KOiK01813.
    OMAiIPVSMHC.
    OrthoDBiEOG6KMB74.

    Family and domain databases

    Gene3Di3.20.20.150. 1 hit.
    HAMAPiMF_00541. RhaA.
    InterProiIPR009308. Rhamnose_isomerase.
    IPR013022. Xyl_isomerase-like_TIM-brl.
    [Graphical view]
    PfamiPF06134. RhaA. 1 hit.
    [Graphical view]
    SUPFAMiSSF51658. SSF51658. 1 hit.
    TIGRFAMsiTIGR01748. rhaA. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q9KCL9-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSMKSQFERA KIEYGQWGID VEEALERLKQ VPISIHCWQG DDVGGFELSK    50
    GELSGGIDVT GDYPGKATTP EELRMDLEKA LSLIPGKHRV NLHAIYAETD 100
    GKVVERDQLE PRHFEKWVRW AKRHGLGLDF NPTLFSHEKA KDGLTLAHPD 150
    QAIRQFWIDH CIASRKIGEY FGKELETPCL TNIWIPDGYK DTPSDRLTPR 200
    KRLKESLDQI FAAEINEAYN LDAVESKLFG IGSESYVVGS HEFYLSYALK 250
    NDKLCLLDTG HYHPTETVSN KISAMLLFHD KLALHVSRPV RWDSDHVVTF 300
    DDELREIALE IVRNDALDRV LIGLDFFDAS INRIAAWTIG TRNVIKALLF 350
    AMLIPHKQLK EWQETGDYTR RLAVLEEFKT YPLGAIWNEY CERMNVPIKE 400
    EWLKEIAIYE KEVLLQRH 418
    Length:418
    Mass (Da):48,178
    Last modified:October 1, 2000 - v1
    Checksum:i10165258A259864F
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000004 Genomic DNA. Translation: BAB05271.1.
    PIRiH83843.
    RefSeqiNP_242418.1. NC_002570.2.
    WP_010897715.1. NC_002570.2.

    Genome annotation databases

    EnsemblBacteriaiBAB05271; BAB05271; BAB05271.
    GeneIDi891271.
    KEGGibha:BH1552.
    PATRICi18940208. VBIBacHal18977_1617.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000004 Genomic DNA. Translation: BAB05271.1 .
    PIRi H83843.
    RefSeqi NP_242418.1. NC_002570.2.
    WP_010897715.1. NC_002570.2.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    3P14 X-ray 2.51 A/B/C/D 1-418 [» ]
    3UU0 X-ray 2.70 A/B/C/D 1-418 [» ]
    3UVA X-ray 2.69 A/B/C/D 1-418 [» ]
    3UXI X-ray 2.73 A/B/C/D 1-418 [» ]
    ProteinModelPortali Q9KCL9.
    SMRi Q9KCL9. Positions 2-417.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 272558.BH1552.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAB05271 ; BAB05271 ; BAB05271 .
    GeneIDi 891271.
    KEGGi bha:BH1552.
    PATRICi 18940208. VBIBacHal18977_1617.

    Phylogenomic databases

    eggNOGi COG4806.
    HOGENOMi HOG000269679.
    KOi K01813.
    OMAi IPVSMHC.
    OrthoDBi EOG6KMB74.

    Enzyme and pathway databases

    UniPathwayi UPA00541 ; UER00601 .
    BioCyci BHAL272558:GJC5-1636-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei Q9KCL9.

    Family and domain databases

    Gene3Di 3.20.20.150. 1 hit.
    HAMAPi MF_00541. RhaA.
    InterProi IPR009308. Rhamnose_isomerase.
    IPR013022. Xyl_isomerase-like_TIM-brl.
    [Graphical view ]
    Pfami PF06134. RhaA. 1 hit.
    [Graphical view ]
    SUPFAMi SSF51658. SSF51658. 1 hit.
    TIGRFAMsi TIGR01748. rhaA. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of the alkaliphilic bacterium Bacillus halodurans and genomic sequence comparison with Bacillus subtilis."
      Takami H., Nakasone K., Takaki Y., Maeno G., Sasaki R., Masui N., Fuji F., Hirama C., Nakamura Y., Ogasawara N., Kuhara S., Horikoshi K.
      Nucleic Acids Res. 28:4317-4331(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125.

    Entry informationi

    Entry nameiRHAA_BACHD
    AccessioniPrimary (citable) accession number: Q9KCL9
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: December 19, 2001
    Last sequence update: October 1, 2000
    Last modified: October 1, 2014
    This is version 83 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Reference proteome

    Documents

    1. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    2. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3