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Protein

Intracellular exo-alpha-(1->5)-L-arabinofuranosidase

Gene

abfA

Organism
Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Involved in the degradation of arabinan and is a key enzyme in the complete degradation of the plant cell wall. Catalyzes the cleavage of terminal alpha-(1->5)-arabinofuranosyl bonds in different hemicellulosic homopolysaccharides (branched and debranched arabinans) (By similarity).By similarity

Catalytic activityi

Hydrolysis of terminal non-reducing alpha-L-arabinofuranoside residues in alpha-L-arabinosides.

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei28 – 281SubstrateBy similarity
Binding sitei73 – 731Substrate; via amide nitrogenBy similarity
Active sitei174 – 1741Proton donor/acceptorBy similarity
Binding sitei245 – 2451SubstrateBy similarity
Active sitei293 – 2931NucleophileBy similarity
Binding sitei293 – 2931SubstrateBy similarity
Sitei297 – 2971Important for substrate recognitionBy similarity
Binding sitei350 – 3501SubstrateBy similarity
Sitei350 – 3501Important for substrate recognitionBy similarity

GO - Molecular functioni

  1. alpha-L-arabinofuranosidase activity Source: UniProtKB-EC

GO - Biological processi

  1. arabinan catabolic process Source: UniProtKB-UniPathway
  2. L-arabinose metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Glycosidase, Hydrolase

Keywords - Biological processi

Carbohydrate metabolism

Enzyme and pathway databases

BioCyciBHAL272558:GJC5-1945-MONOMER.
RETL1328306-WGS:GSTH-6053-MONOMER.
UniPathwayiUPA00667.

Protein family/group databases

CAZyiGH51. Glycoside Hydrolase Family 51.

Names & Taxonomyi

Protein namesi
Recommended name:
Intracellular exo-alpha-(1->5)-L-arabinofuranosidase (EC:3.2.1.55)
Short name:
ABF
Alternative name(s):
Intracellular arabinan exo-alpha-(1->5)-L-arabinosidase
Short name:
Arabinosidase
Gene namesi
Name:abfA
Ordered Locus Names:BH1861
OrganismiBacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
Taxonomic identifieri272558 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
ProteomesiUP000001258 Componenti: Chromosome

Subcellular locationi

  1. Cytoplasm By similarity

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 500500Intracellular exo-alpha-(1->5)-L-arabinofuranosidasePRO_0000057699Add
BLAST

Interactioni

Subunit structurei

Homohexamer; trimer of dimers.By similarity

Protein-protein interaction databases

STRINGi272558.BH1861.

Structurei

3D structure databases

ProteinModelPortaliQ9KBR4.
SMRiQ9KBR4. Positions 5-499.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni173 – 1742Substrate bindingBy similarity

Sequence similaritiesi

Belongs to the glycosyl hydrolase 51 family.Curated

Phylogenomic databases

eggNOGiCOG3534.
HOGENOMiHOG000236895.
KOiK01209.
OMAiKTHVESE.
OrthoDBiEOG6SJJF9.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR010720. Alpha-L-AF_C.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PfamiPF06964. Alpha-L-AF_C. 1 hit.
[Graphical view]
SMARTiSM00813. Alpha-L-AF_C. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9KBR4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTLTATMVVD KSFKIGEIDK RIYGSFIEHL GRAVYEGIYE PGHPDGDEQG
60 70 80 90 100
FRKDVIRLVQ ELQVPLVRYP GGNFVSGYNW EDGVGPVSER PKRLDLAWRT
110 120 130 140 150
TETNEIGTNE FVDWAKKVGA EVNMAVNLGS RGVDAARNLV EYCNHPSGSY
160 170 180 190 200
WSDLRISHGY KDPHNIKTWC LGNEMDGPWQ IGQKTAEEYG RVAAEAGKVM
210 220 230 240 250
KLVDPSIELV ACGSSNSKMA TFADWEATVL DHTYDYVDYI SLHTYYGNRD
260 270 280 290 300
DDLANYLAQS MDMDEFIRSV IAIADYVKAK KRSKKTIHLS FDEWNVWFHS
310 320 330 340 350
NEADRQITPW SVAPPLLEDI YTFEDALLVG SMLITLLKHA DRVKIACLAQ
360 370 380 390 400
LVNVIAPIMT EKGGPAWKQT IFYPYMHASV YGRGVALQAQ ISSPKYDSKD
410 420 430 440 450
FTDVPYLDAA VVHLEEAEEV TIFAVNKHQT ESLNLQCDMR SFEGYHVLEH
460 470 480 490 500
IVLEHENMKA TNQGREQVTP HHNGDSAIDQ GRLTANLAKL SWNVIRLGKK
Length:500
Mass (Da):56,402
Last modified:October 1, 2000 - v1
Checksum:i802337EEA0F225B5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000004 Genomic DNA. Translation: BAB05580.1.
PIRiE83882.
RefSeqiNP_242727.1. NC_002570.2.

Genome annotation databases

EnsemblBacteriaiBAB05580; BAB05580; BAB05580.
KEGGibha:BH1861.
PATRICi18940852. VBIBacHal18977_1939.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000004 Genomic DNA. Translation: BAB05580.1.
PIRiE83882.
RefSeqiNP_242727.1. NC_002570.2.

3D structure databases

ProteinModelPortaliQ9KBR4.
SMRiQ9KBR4. Positions 5-499.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272558.BH1861.

Protein family/group databases

CAZyiGH51. Glycoside Hydrolase Family 51.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAB05580; BAB05580; BAB05580.
KEGGibha:BH1861.
PATRICi18940852. VBIBacHal18977_1939.

Phylogenomic databases

eggNOGiCOG3534.
HOGENOMiHOG000236895.
KOiK01209.
OMAiKTHVESE.
OrthoDBiEOG6SJJF9.

Enzyme and pathway databases

UniPathwayiUPA00667.
BioCyciBHAL272558:GJC5-1945-MONOMER.
RETL1328306-WGS:GSTH-6053-MONOMER.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR010720. Alpha-L-AF_C.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PfamiPF06964. Alpha-L-AF_C. 1 hit.
[Graphical view]
SMARTiSM00813. Alpha-L-AF_C. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of the alkaliphilic bacterium Bacillus halodurans and genomic sequence comparison with Bacillus subtilis."
    Takami H., Nakasone K., Takaki Y., Maeno G., Sasaki R., Masui N., Fuji F., Hirama C., Nakamura Y., Ogasawara N., Kuhara S., Horikoshi K.
    Nucleic Acids Res. 28:4317-4331(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125.

Entry informationi

Entry nameiIABF_BACHD
AccessioniPrimary (citable) accession number: Q9KBR4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 26, 2002
Last sequence update: October 1, 2000
Last modified: April 1, 2015
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.