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Q9KBQ3 (ARAB_BACHD) Reviewed, UniProtKB/Swiss-Prot

Last modified May 1, 2013. Version 69. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Ribulokinase
EC=2.7.1.16
Gene names
Name:araB
Ordered Locus Names:BH1872
OrganismBacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) [Complete proteome] [HAMAP]
Taxonomic identifier272558 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Bacilli › Bacillales › Bacillaceae › Bacillus ›

Protein attributes

Sequence length563 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Catalytic activity

ATP + L(or D)-ribulose = ADP + L(or D)-ribulose 5-phosphate. HAMAP-Rule MF_00520

Pathway

Carbohydrate degradation; L-arabinose degradation via L-ribulose; D-xylulose 5-phosphate from L-arabinose (bacterial route): step 2/3. HAMAP-Rule MF_00520

Sequence similarities

Belongs to the ribulokinase family.

Ontologies

Keywords
   Biological processArabinose catabolism
Carbohydrate metabolism
   LigandATP-binding
Nucleotide-binding
   Molecular functionKinase
Transferase
   Technical term3D-structure
Complete proteome
Gene Ontology (GO)
   Biological_processL-arabinose catabolic process to xylulose 5-phosphate

Inferred from electronic annotation. Source: UniProtKB-UniPathway

   Molecular_functionATP binding

Inferred from electronic annotation. Source: UniProtKB-KW

ribulokinase activity

Inferred from electronic annotation. Source: HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 563563Ribulokinase HAMAP-Rule MF_00520
PRO_0000198354

Secondary structure

1 ................................................................................................. 563
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
Q9KBQ3 [UniParc].

Last modified October 1, 2000. Version 1.
Checksum: CCBC399006669ACD

FASTA56361,668
        10         20         30         40         50         60 
MTTKYTIGVD YGTESGRAVL IDLSNGQELA DHVTPYRHGV IDQYLPNTNI KLGHEWALQH 

        70         80         90        100        110        120 
PLDYVEVLTT SVPAVMKESG VDADDVIGIG VDFTACTMLP VDEEGQPLCL LAQYKDNPHS 

       130        140        150        160        170        180 
WVKLWKHHAA QDKANAINEM AEKRGEAFLP RYGGKISSEW MIAKVWQILD EAEDVYNRTD 

       190        200        210        220        230        240 
QFLEATDWIV SQMTGKIVKN SCTAGYKAIW HKREGYPSNE FFKALDPRLE HLTTTKLRGD 

       250        260        270        280        290        300 
IVPLGERAGG LLPEMAEKMG LNPGIAVAVG NVDAHAAVPA VGVTTPGKLV MAMGTSICHM 

       310        320        330        340        350        360 
LLGEKEQEVE GMCGVVEDGI IPGYLGYEAG QSAVGDIFAW FVKHGVSAAT FDEAQEKGVN 

       370        380        390        400        410        420 
VHALLEEKAS QLRPGESGLL ALDWWNGNRS ILVDTELSGM LLGYTLQTKP EEIYRALLEA 

       430        440        450        460        470        480 
TAFGTRAIVD AFHGRGVEVH ELYACGGLPQ KNHLLMQIFA DVTNREIKVA ASKQTPALGA 

       490        500        510        520        530        540 
AMFASVAAGS EVGGYDSIEE AAKKMGRVKD ETFKPIPEHV AIYEKLYQEY VTLHDYFGRG 

       550        560 
ANDVMKRLKA LKSIQHRPSS LLT

« Hide

References

[1]"Complete genome sequence of the alkaliphilic bacterium Bacillus halodurans and genomic sequence comparison with Bacillus subtilis."
Takami H., Nakasone K., Takaki Y., Maeno G., Sasaki R., Masui N., Fuji F., Hirama C., Nakamura Y., Ogasawara N., Kuhara S., Horikoshi K.
Nucleic Acids Res. 28:4317-4331(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		BA000004 Genomic DNA. Translation: BAB05591.1.
PIRH83883.
RefSeqNP_242738.1. NC_002570.2.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
3QDKX-ray2.31A/B/C/D3-563[»]
ProteinModelPortalQ9KBQ3.
ModBaseSearch...

Protein-protein interaction databases

STRING272558.BH1872.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAB05591; BAB05591; BAB05591.
GeneID892471.
KEGGbha:BH1872.
PATRIC18940874. VBIBacHal18977_1950.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1069.
HOGENOMHOG000236884.
KOK00853.
OMARRTPFAN.
ProtClustDBPRK04123.

Enzyme and pathway databases

BioCycBHAL272558:GJC5-1956-MONOMER.
UniPathwayUPA00145; UER00566.

Family and domain databases

HAMAPMF_00520. Ribulokinase.
InterProIPR018485. Carb_kinase_FGGY_C.
IPR018484. Carb_kinase_FGGY_N.
IPR005929. L_ribulokin.
[Graphical view]
PfamPF02782. FGGY_C. 1 hit.
PF00370. FGGY_N. 1 hit.
[Graphical view]
TIGRFAMsTIGR01234. L-ribulokinase. 1 hit.
ProtoNetSearch...

Other

EvolutionaryTraceQ9KBQ3.

Entry information

Entry nameARAB_BACHD
AccessionPrimary (citable) accession number: Q9KBQ3
Entry history
Integrated into UniProtKB/Swiss-Prot: January 23, 2002
Last sequence update: October 1, 2000
Last modified: May 1, 2013
This is version 69 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

PATHWAY comments

Index of metabolic and biosynthesis pathways

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

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