Reviewed,
UniProtKB/Swiss-Prot Q9K993 (XYLA_BACHD)
Last modified
February 9, 2010.
Version 61.
History...
Clusters with 100%,
90%,
50% identity |
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Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents
Names and origin
| Protein names | Recommended name: Xylose isomerase EC=5.3.1.5 | ||||
| Gene names |
| ||||
| Organism | Bacillus halodurans [Complete proteome] [HAMAP] | ||||
| Taxonomic identifier | 86665 [NCBI] | ||||
| Taxonomic lineage | Bacteria › Firmicutes › Bacillales › Bacillaceae › Bacillus |
Protein attributes
| Sequence length | 440 AA. |
| Sequence status | Complete. |
| Protein existence | Inferred from homology. |
General annotation (Comments)
| Catalytic activity | D-xylose = D-xylulose. HAMAP MF_00455 |
| Cofactor | Binds 2 magnesium ions per subunit By similarity. HAMAP MF_00455 |
| Subunit structure | Homotetramer By similarity. HAMAP MF_00455 |
| Subcellular location | Cytoplasm By similarity HAMAP MF_00455. |
| Sequence similarities | Belongs to the xylose isomerase family. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Carbohydrate metabolism Pentose shunt Xylose metabolism |
| Cellular component | Cytoplasm |
| Ligand | Magnesium Metal-binding |
| Molecular function | Isomerase |
| Technical term | Complete proteome |
| Gene Ontology (GO) | |
| Biological process | D-xylose metabolic process Inferred from electronic annotation. Source: HAMAP pentose-phosphate shuntInferred from electronic annotation. Source: HAMAP |
| Cellular component | cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell |
| Molecular function | magnesium ion binding Inferred from electronic annotation. Source: HAMAP xylose isomerase activityInferred from electronic annotation. Source: HAMAP |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 440 | 440 | Xylose isomerase HAMAP MF_00455 | PRO_0000195762 | |||||
Sites | |||||||||
| Active site | 99 | 1 | By similarity | ||||||
| Active site | 102 | 1 | By similarity | ||||||
| Metal binding | 230 | 1 | Magnesium 1 By similarity | ||||||
| Metal binding | 266 | 1 | Magnesium 1 By similarity | ||||||
| Metal binding | 266 | 1 | Magnesium 2 By similarity | ||||||
| Metal binding | 269 | 1 | Magnesium 2 By similarity | ||||||
| Metal binding | 294 | 1 | Magnesium 1 By similarity | ||||||
| Metal binding | 305 | 1 | Magnesium 2 By similarity | ||||||
| Metal binding | 307 | 1 | Magnesium 2 By similarity | ||||||
| Metal binding | 337 | 1 | Magnesium 1 By similarity | ||||||
Sequences
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References
| [1] | "Complete genome sequence of the alkaliphilic bacterium Bacillus halodurans and genomic sequence comparison with Bacillus subtilis." Takami H., Nakasone K., Takaki Y., Maeno G., Sasaki R., Masui N., Fuji F., Hirama C., Nakamura Y., Ogasawara N., Kuhara S., Horikoshi K. Nucleic Acids Res. 28:4317-4331(2000) [PubMed: 11058132] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-125 / C-125 / DSM 18197 / FERM 7344 / JCM 9153. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | BA000004 Genomic DNA. Translation: BAB06476.1. |
| PIR | E83994. |
| RefSeq | NP_243623.1. |
3D structure databases | |
| SMR | Q9K993. Positions 3-437. |
| ModBase | Search... |
Genome annotation databases | |
| GeneID | 893475. |
| GenomeReviews | Gene locus BH2757 in contig BA000004_GR. |
| KEGG | bha:BH2757. |
| NMPDR | fig|272558.1.peg.2757. |
Organism-specific databases | |
| CMR | Search... |
Phylogenomic databases | |
| HOGENOM | HBG297199. |
| OMA | LLGWDTD. |
| PhylomeDB | Q9K993. |
Enzyme and pathway databases | |
| BioCyc | BHAL272558:BH2757-MONOMER. |
| BRENDA | 5.3.1.5. 191865. |
Family and domain databases | |
| HAMAP | MF_00455. Xylose_isom_A. [Tree] |
| InterPro | IPR013022. Xyl_isomerase-like_TIM-brl. IPR012307. Xyl_isomerase_TIM-brl. IPR013452. Xylose_isom_bac. IPR001998. Xylose_isomerase. [Graphical view] |
| Gene3D | G3DSA:3.20.20.150. Xyl_isomerase-like_TIM-brl. 1 hit. |
| Pfam | PF01261. AP_endonuc_2. 1 hit. [Graphical view] |
| PRINTS | PR00688. XYLOSISMRASE. |
| TIGRFAMs | TIGR02630. xylose_isom_A. 1 hit. |
| PROSITE | PS51415. XYLOSE_ISOMERASE. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Entry information
| Entry name | XYLA_BACHD | ||||||||
| Accession | Primary (citable) accession number: Q9K993 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes) | ||||||||

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