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Q9K6B9

- SPEB_BACHD

UniProt

Q9K6B9 - SPEB_BACHD

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Protein

Agmatinase

Gene

speB

Organism
Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi

Functioni

Catalyzes the formation of putrescine from agmatine.By similarity

Catalytic activityi

Agmatine + H2O = putrescine + urea.

Cofactori

Mn2+PROSITE-ProRule annotation

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi112 – 1121ManganesePROSITE-ProRule annotation
Metal bindingi135 – 1351ManganesePROSITE-ProRule annotation
Metal bindingi137 – 1371ManganesePROSITE-ProRule annotation
Metal bindingi139 – 1391ManganesePROSITE-ProRule annotation
Metal bindingi216 – 2161ManganesePROSITE-ProRule annotation
Metal bindingi218 – 2181ManganesePROSITE-ProRule annotation

GO - Molecular functioni

  1. agmatinase activity Source: UniProtKB-EC
  2. metal ion binding Source: UniProtKB-KW

GO - Biological processi

  1. putrescine biosynthetic process from arginine Source: UniProtKB-UniPathway
  2. spermidine biosynthetic process Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Hydrolase

Keywords - Biological processi

Polyamine biosynthesis, Putrescine biosynthesis, Spermidine biosynthesis

Keywords - Ligandi

Manganese, Metal-binding

Enzyme and pathway databases

BioCyciBHAL272558:GJC5-3913-MONOMER.
UniPathwayiUPA00534; UER00287.

Names & Taxonomyi

Protein namesi
Recommended name:
Agmatinase (EC:3.5.3.11)
Alternative name(s):
Agmatine ureohydrolase
Short name:
AUH
Gene namesi
Name:speB
Ordered Locus Names:BH3810
OrganismiBacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
Taxonomic identifieri272558 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
ProteomesiUP000001258: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 289289AgmatinasePRO_0000173727Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi272558.BH3810.

Structurei

3D structure databases

ProteinModelPortaliQ9K6B9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the arginase family. Agmatinase subfamily.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiCOG0010.
KOiK01480.
OMAiSPPYDPF.

Family and domain databases

Gene3Di3.40.800.10. 1 hit.
InterProiIPR005925. Agmatinase-rel.
IPR006035. Ureohydrolase.
IPR023696. Ureohydrolase_domain.
IPR020855. Ureohydrolase_Mn_BS.
[Graphical view]
PANTHERiPTHR11358. PTHR11358. 1 hit.
PfamiPF00491. Arginase. 1 hit.
[Graphical view]
PIRSFiPIRSF036979. Arginase. 1 hit.
TIGRFAMsiTIGR01230. agmatinase. 1 hit.
PROSITEiPS01053. ARGINASE_1. 1 hit.
PS51409. ARGINASE_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9K6B9-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MRFDEAYSGK VFIMSRSNYE KSKAVIFGMP MDWTVSFRPS SRFGPNRIRE
60 70 80 90 100
ASLGLEEYSP YMDKHLEEVA YFDAGDMLLP FGNPQRSLEM IESYVDKLLA
110 120 130 140 150
DQKMPIGLGG EHLVSWPIFK AMHKIYPDMA IIHIDAHADL REEYEGEPLS
160 170 180 190 200
HSTPIRKACS LIGPENVYSF GIRSGMREEF QYAKDSGMYM AKFEVATPLK
210 220 230 240 250
EVLPKLAGRN VYVTIDIDVL DPAFAPGTGT AEAGGISSKE LLEAIVAIAH
260 270 280
SDVNVIGADL VEVAPAYDPS EKTPIAASKF VREMLLGWV
Length:289
Mass (Da):32,155
Last modified:March 15, 2004 - v2
Checksum:i2F8B0C4CA4EB4B89
GO

Sequence cautioni

The sequence BAB07529.1 differs from that shown. Reason: Frameshift at position 40. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000004 Genomic DNA. Translation: BAB07529.1. Frameshift.
PIRiB84126.
RefSeqiNP_244677.1. NC_002570.2.

Genome annotation databases

EnsemblBacteriaiBAB07529; BAB07529; BAB07529.
GeneIDi890481.
KEGGibha:BH3810.
PATRICi18944936. VBIBacHal18977_3966.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000004 Genomic DNA. Translation: BAB07529.1 . Frameshift.
PIRi B84126.
RefSeqi NP_244677.1. NC_002570.2.

3D structure databases

ProteinModelPortali Q9K6B9.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 272558.BH3810.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAB07529 ; BAB07529 ; BAB07529 .
GeneIDi 890481.
KEGGi bha:BH3810.
PATRICi 18944936. VBIBacHal18977_3966.

Phylogenomic databases

eggNOGi COG0010.
KOi K01480.
OMAi SPPYDPF.

Enzyme and pathway databases

UniPathwayi UPA00534 ; UER00287 .
BioCyci BHAL272558:GJC5-3913-MONOMER.

Family and domain databases

Gene3Di 3.40.800.10. 1 hit.
InterProi IPR005925. Agmatinase-rel.
IPR006035. Ureohydrolase.
IPR023696. Ureohydrolase_domain.
IPR020855. Ureohydrolase_Mn_BS.
[Graphical view ]
PANTHERi PTHR11358. PTHR11358. 1 hit.
Pfami PF00491. Arginase. 1 hit.
[Graphical view ]
PIRSFi PIRSF036979. Arginase. 1 hit.
TIGRFAMsi TIGR01230. agmatinase. 1 hit.
PROSITEi PS01053. ARGINASE_1. 1 hit.
PS51409. ARGINASE_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of the alkaliphilic bacterium Bacillus halodurans and genomic sequence comparison with Bacillus subtilis."
    Takami H., Nakasone K., Takaki Y., Maeno G., Sasaki R., Masui N., Fuji F., Hirama C., Nakamura Y., Ogasawara N., Kuhara S., Horikoshi K.
    Nucleic Acids Res. 28:4317-4331(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125.

Entry informationi

Entry nameiSPEB_BACHD
AccessioniPrimary (citable) accession number: Q9K6B9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 15, 2004
Last sequence update: March 15, 2004
Last modified: November 26, 2014
This is version 74 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3