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Protein
Submitted name:

Transcriptional activator of arginine utilization operons

Gene

rocR

Organism
Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotationSAAS annotation

Keywords - Ligandi

ATP-bindingUniRule annotationSAAS annotation, DNA-bindingSAAS annotation, Nucleotide-binding

Enzyme and pathway databases

BioCyciBHAL272558:GJC5-4047-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Transcriptional activator of arginine utilization operonsImported
Gene namesi
Name:rocRImported
Ordered Locus Names:BH3944Imported
OrganismiBacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)Imported
Taxonomic identifieri272558 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001258 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi272558.BH3944.

Structurei

3D structure databases

ProteinModelPortaliQ9K5Z1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini147 – 375229Sigma-54 factor interactionInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 sigma-54 factor interaction domain.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108JUB. Bacteria.
COG3829. LUCA.
HOGENOMiHOG000058487.
KOiK06714.
OMAiMEEVEIY.
OrthoDBiPOG091H03UM.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
3.40.50.300. 1 hit.
InterProiIPR003593. AAA+_ATPase.
IPR009057. Homeodomain-like.
IPR002197. HTH_Fis.
IPR027417. P-loop_NTPase.
IPR000014. PAS.
IPR013656. PAS_4.
IPR002078. Sigma_54_int.
IPR025662. Sigma_54_int_dom_ATP-bd_1.
IPR025943. Sigma_54_int_dom_ATP-bd_2.
IPR025944. Sigma_54_int_dom_CS.
[Graphical view]
PfamiPF02954. HTH_8. 1 hit.
PF08448. PAS_4. 1 hit.
PF00158. Sigma54_activat. 1 hit.
[Graphical view]
PRINTSiPR01590. HTHFIS.
SMARTiSM00382. AAA. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF52540. SSF52540. 1 hit.
SSF55785. SSF55785. 1 hit.
TIGRFAMsiTIGR00229. sensory_box. 1 hit.
PROSITEiPS00675. SIGMA54_INTERACT_1. 1 hit.
PS00676. SIGMA54_INTERACT_2. 1 hit.
PS00688. SIGMA54_INTERACT_3. 1 hit.
PS50045. SIGMA54_INTERACT_4. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9K5Z1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MERIGNLPLS QQRIIYETIM NEIDVGIHVI DTFGQTIIYN KKMMEIESLT
60 70 80 90 100
KEDVENKDFL DIFMFEEGQG STLLEALYKK KHSKDVKQTY FNNRGKEITT
110 120 130 140 150
INNTFPLYEN GQVIGAIEIS KDVTKLERLI RKNMESKGNT RYTFDSIIGE
160 170 180 190 200
STAIREVIEN TKRATRTASS VLIVGETGTG KELFAQSIHN GSDRSKGPFI
210 220 230 240 250
SQNCAAMPET LIESLLFGTK KGAYTGAIER PGLFEEAEGG TLLLDEINSL
260 270 280 290 300
SPPLQAKLLR AIQEKQIRRV GDTVDRKVNV RILSTINEDP IEAIASGRLR
310 320 330 340 350
KDLYYRLGVV TLFIPPLRER KEDIVPLVDH FIAKYNERFQ MEVKGLSDEV
360 370 380 390 400
TQLLLQYDWP GNVRELEHII EGAMNLMIGE DLIDVRHLPF HFRQKSLSAP
410 420 430 440 450
LSSQITSVYE TGPSDAIEHS VEEQQPLRDL KDYLLEAEKM YIKKALERNK
460 470
YHVTKTAEKL GLSRQSLQYR MKRLGISAK
Length:479
Mass (Da):54,562
Last modified:October 1, 2000 - v1
Checksum:i8849A8187A17904D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000004 Genomic DNA. Translation: BAB07663.1.
PIRiH84142.
RefSeqiWP_010900069.1. NC_002570.2.

Genome annotation databases

EnsemblBacteriaiBAB07663; BAB07663; BAB07663.
KEGGibha:BH3944.
PATRICi18945216. VBIBacHal18977_4106.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000004 Genomic DNA. Translation: BAB07663.1.
PIRiH84142.
RefSeqiWP_010900069.1. NC_002570.2.

3D structure databases

ProteinModelPortaliQ9K5Z1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272558.BH3944.

Protocols and materials databases

DNASUi891209.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAB07663; BAB07663; BAB07663.
KEGGibha:BH3944.
PATRICi18945216. VBIBacHal18977_4106.

Phylogenomic databases

eggNOGiENOG4108JUB. Bacteria.
COG3829. LUCA.
HOGENOMiHOG000058487.
KOiK06714.
OMAiMEEVEIY.
OrthoDBiPOG091H03UM.

Enzyme and pathway databases

BioCyciBHAL272558:GJC5-4047-MONOMER.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
3.40.50.300. 1 hit.
InterProiIPR003593. AAA+_ATPase.
IPR009057. Homeodomain-like.
IPR002197. HTH_Fis.
IPR027417. P-loop_NTPase.
IPR000014. PAS.
IPR013656. PAS_4.
IPR002078. Sigma_54_int.
IPR025662. Sigma_54_int_dom_ATP-bd_1.
IPR025943. Sigma_54_int_dom_ATP-bd_2.
IPR025944. Sigma_54_int_dom_CS.
[Graphical view]
PfamiPF02954. HTH_8. 1 hit.
PF08448. PAS_4. 1 hit.
PF00158. Sigma54_activat. 1 hit.
[Graphical view]
PRINTSiPR01590. HTHFIS.
SMARTiSM00382. AAA. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF52540. SSF52540. 1 hit.
SSF55785. SSF55785. 1 hit.
TIGRFAMsiTIGR00229. sensory_box. 1 hit.
PROSITEiPS00675. SIGMA54_INTERACT_1. 1 hit.
PS00676. SIGMA54_INTERACT_2. 1 hit.
PS00688. SIGMA54_INTERACT_3. 1 hit.
PS50045. SIGMA54_INTERACT_4. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ9K5Z1_BACHD
AccessioniPrimary (citable) accession number: Q9K5Z1
Entry historyi
Integrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: October 1, 2000
Last modified: September 7, 2016
This is version 113 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.