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Protein
Submitted name:

Ych

Gene

ych

Organism
Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium radiobacter)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Names & Taxonomyi

Protein namesi
Submitted name:
YchImported
Gene namesi
Name:ychImported
Encoded oniPlasmid TiImported
OrganismiRhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium radiobacter)Imported
Taxonomic identifieri358 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupAgrobacteriumAgrobacterium tumefaciens complex

Family & Domainsi

Family and domain databases

Gene3Di2.20.140.10. 1 hit.
InterProiIPR008893. WGR_domain.
[Graphical view]
PfamiPF05406. WGR. 1 hit.
[Graphical view]
SMARTiSM00773. WGR. 1 hit.
[Graphical view]
SUPFAMiSSF142921. SSF142921. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9JN21-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MENKETCEVH LHRIDAAQNM RRFYGIAIQP TLFGGASVIR NWGRIGAGGQ
60 70 80
TMMETFDHPD GAHIALSRLE RTKRRRGYRD ASSVE
Length:85
Mass (Da):9,644
Last modified:October 1, 2000 - v1
Checksum:i43D0BF0EF8D94FFF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF242881 Genomic DNA. Translation: AAF77135.1.
RefSeqiNP_059690.1. NC_002377.1.
WP_010892378.1. NC_002377.1.

Genome annotation databases

GeneIDi1224209.
KEGGipg:1224209.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF242881 Genomic DNA. Translation: AAF77135.1.
RefSeqiNP_059690.1. NC_002377.1.
WP_010892378.1. NC_002377.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi1224209.
KEGGipg:1224209.

Family and domain databases

Gene3Di2.20.140.10. 1 hit.
InterProiIPR008893. WGR_domain.
[Graphical view]
PfamiPF05406. WGR. 1 hit.
[Graphical view]
SMARTiSM00773. WGR. 1 hit.
[Graphical view]
SUPFAMiSSF142921. SSF142921. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "The conjugal transfer system of Agrobacterium tumefaciens octopine-type Ti plasmids is closely related to the transfer system of an IncP plasmid and distantly related to Ti plasmid vir genes."
    Alt-Morbe J., Stryker J.L., Fuqua C., Li P.L., Farrand S.K., Winans S.C.
    J. Bacteriol. 178:4248-4257(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Plasmid: Ti
  2. "Octopine-type Ti plasmid sequence."
    Winans S.C., Zhu J., Oger P.M., Schrammeijer B., Hooykaas P.J., Farrand S.K.
    Submitted (FEB-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Plasmid: Ti

Entry informationi

Entry nameiQ9JN21_RHIRD
AccessioniPrimary (citable) accession number: Q9JN21
Entry historyi
Integrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: October 1, 2000
Last modified: April 1, 2015
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

PlasmidImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.