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Q9JM83

- CALM4_MOUSE

UniProt

Q9JM83 - CALM4_MOUSE

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Protein

Calmodulin-4

Gene

Calm4

Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli

Functioni

Implicated in the early stage of ectopic ossification.

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Calcium bindingi21 – 32121PROSITE-ProRule annotationAdd
BLAST
Calcium bindingi57 – 68122PROSITE-ProRule annotationAdd
BLAST
Calcium bindingi93 – 104123PROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

  1. calcium ion binding Source: MGI
Complete GO annotation...

Keywords - Ligandi

Calcium, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Calmodulin-4
Alternative name(s):
Calcium-binding protein Dd112
Gene namesi
Name:Calm4
Synonyms:Dd112
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 13

Organism-specific databases

MGIiMGI:1931464. Calm4.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 148148Calmodulin-4PRO_0000073856Add
BLAST

Proteomic databases

MaxQBiQ9JM83.
PRIDEiQ9JM83.

PTM databases

PhosphoSiteiQ9JM83.

Expressioni

Gene expression databases

BgeeiQ9JM83.
CleanExiMM_CALM4.
GenevestigatoriQ9JM83.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000041636.

Structurei

3D structure databases

ProteinModelPortaliQ9JM83.
SMRiQ9JM83. Positions 5-144.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini8 – 4336EF-hand 1PROSITE-ProRule annotationAdd
BLAST
Domaini44 – 7936EF-hand 2PROSITE-ProRule annotationAdd
BLAST
Domaini80 – 11536EF-hand 3PROSITE-ProRule annotationAdd
BLAST
Domaini116 – 14833EF-hand 4PROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 4 EF-hand domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiCOG5126.
GeneTreeiENSGT00760000118901.
HOGENOMiHOG000233018.
HOVERGENiHBG012180.
InParanoidiQ9JM83.
KOiK02183.
OMAiTLECCKE.
OrthoDBiEOG7GFB71.
PhylomeDBiQ9JM83.
TreeFamiTF339519.

Family and domain databases

Gene3Di1.10.238.10. 1 hit.
InterProiIPR011992. EF-hand-dom_pair.
IPR018247. EF_Hand_1_Ca_BS.
IPR002048. EF_hand_dom.
[Graphical view]
PfamiPF13499. EF-hand_7. 2 hits.
[Graphical view]
SMARTiSM00054. EFh. 4 hits.
[Graphical view]
PROSITEiPS00018. EF_HAND_1. 3 hits.
PS50222. EF_HAND_2. 4 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9JM83-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSHGFTKEEV AEFQAAFNRF DKNKDGHISV EELGDVMKQL GKNLPEKDLK
60 70 80 90 100
ALISKLDTDG DGKISFEEFL TAIEKYKKGH RAGELRAVFN VLDQNGDGYI
110 120 130 140
TVDELKESLS KLGESLSQEE LEDMIRVADV DQDGKVKYEE FVRLHVEN
Length:148
Mass (Da):16,767
Last modified:June 1, 2001 - v2
Checksum:i2AE22BC738AD2F9D
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti9 – 91E → V in BAB22914. (PubMed:16141072)Curated
Sequence conflicti124 – 1241M → V in BAB22914. (PubMed:16141072)Curated
Sequence conflicti146 – 1483VEN → I in BAA95412. 1 PublicationCurated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB036744 Genomic DNA. Translation: BAA95412.1.
AK009956 mRNA. Translation: BAB26608.1.
AK009664 mRNA. Translation: BAB26425.1.
AK003648 mRNA. Translation: BAB22914.1.
CCDSiCCDS26215.1.
RefSeqiNP_064420.2. NM_020036.4.
UniGeneiMm.21075.

Genome annotation databases

EnsembliENSMUST00000042219; ENSMUSP00000041636; ENSMUSG00000033765.
GeneIDi80796.
KEGGimmu:80796.
UCSCiuc007pjb.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB036744 Genomic DNA. Translation: BAA95412.1 .
AK009956 mRNA. Translation: BAB26608.1 .
AK009664 mRNA. Translation: BAB26425.1 .
AK003648 mRNA. Translation: BAB22914.1 .
CCDSi CCDS26215.1.
RefSeqi NP_064420.2. NM_020036.4.
UniGenei Mm.21075.

3D structure databases

ProteinModelPortali Q9JM83.
SMRi Q9JM83. Positions 5-144.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 10090.ENSMUSP00000041636.

PTM databases

PhosphoSitei Q9JM83.

Proteomic databases

MaxQBi Q9JM83.
PRIDEi Q9JM83.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000042219 ; ENSMUSP00000041636 ; ENSMUSG00000033765 .
GeneIDi 80796.
KEGGi mmu:80796.
UCSCi uc007pjb.1. mouse.

Organism-specific databases

CTDi 80796.
MGIi MGI:1931464. Calm4.

Phylogenomic databases

eggNOGi COG5126.
GeneTreei ENSGT00760000118901.
HOGENOMi HOG000233018.
HOVERGENi HBG012180.
InParanoidi Q9JM83.
KOi K02183.
OMAi TLECCKE.
OrthoDBi EOG7GFB71.
PhylomeDBi Q9JM83.
TreeFami TF339519.

Miscellaneous databases

NextBioi 350136.
PROi Q9JM83.
SOURCEi Search...

Gene expression databases

Bgeei Q9JM83.
CleanExi MM_CALM4.
Genevestigatori Q9JM83.

Family and domain databases

Gene3Di 1.10.238.10. 1 hit.
InterProi IPR011992. EF-hand-dom_pair.
IPR018247. EF_Hand_1_Ca_BS.
IPR002048. EF_hand_dom.
[Graphical view ]
Pfami PF13499. EF-hand_7. 2 hits.
[Graphical view ]
SMARTi SM00054. EFh. 4 hits.
[Graphical view ]
PROSITEi PS00018. EF_HAND_1. 3 hits.
PS50222. EF_HAND_2. 4 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "DD112, a novel mouse gene implicated in the early stage of ectopic ossification."
    Ikegawa S., Nakamura Y.
    Submitted (JAN-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J.
    Tissue: Tongue.

Entry informationi

Entry nameiCALM4_MOUSE
AccessioniPrimary (citable) accession number: Q9JM83
Secondary accession number(s): Q9CR31, Q9D1E9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 1, 2001
Last sequence update: June 1, 2001
Last modified: October 29, 2014
This is version 99 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3